Gene name: VMA13
Reference locus (S288C): YPR036W
Gene biotype: protein_coding
Description: Subunit H of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits
Top 10 interactors (score): VMA1 (0.999); VMA7 (0.999); VPH1 (0.999); STV1 (0.999); VMA11 (0.999); VMA10 (0.999); VMA4 (0.999); VMA5 (0.999); VMA8 (0.999); VMA2 (0.999); VMA3 (0.999); VMA6 (0.999); VMA16 (0.999); VMA9 (0.984); VOA1 (0.965); ATP1 (0.963); ATP4 (0.909); ATP16 (0.907); ATP3 (0.905); ATP7 (0.904)
Homologues (species, bitscore): ATP6V1H (Homo sapiens, 120.6); Atp6v1h (Mus musculus, 120.9); atp6v1h (Danio rerio, 121.7); atp6v1h (Xenopus tropicalis, 118.6); VhaSFD (Drosophila melanogaster, 129.0); vha-15 (Caenorhabditis elegans, 104.0); AT3G42050 (Arabidopsis thaliana, 81.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:615498-616934:+ | gene-YPR036W_AKU4011 | rna-NM_001184133.1_AKU4011 | cds-NP_015361.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:280733-282169:- | gene-YPR036W_BG1 | rna-NM_001184133.1_BG1 | cds-NP_015361.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:693159-694595:+ | gene-YPR036W_Bruggeman | rna-NM_001184133.1_Bruggeman | cds-NP_015361.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:736125-737561:+ | gene-YPR036W_CAT1 | rna-NM_001184133.1_CAT1 | cds-NP_015361.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:619182-620618:+ | gene-YPR036W_CBS1585 | rna-NM_001184133.1_CBS1585 | cds-NP_015361.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:633568-635004:+ | gene-YPR036W_CBS436 | rna-NM_001184133.1_CBS436 | cds-NP_015361.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:622930-624366:+ | gene-YPR036W_CBS6412 | rna-NM_001184133.1_CBS6412 | cds-NP_015361.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:616131-617567:+ | gene-YPR036W_CBS6413 | rna-NM_001184133.1_CBS6413 | cds-NP_015361.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:643811-645247:+ | gene-YPR036W_CENPK1137D | rna-NM_001184133.1_CENPK1137D | cds-NP_015361.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:613426-614862:+ | gene-YPR036W_EthanolRed | rna-NM_001184133.1_EthanolRed | cds-NP_015361.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:621229-622665:+ | gene-YPR036W_FaliES1 | rna-NM_001184133.1_FaliES1 | cds-NP_015361.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:5231-6667:- | gene-YPR036W_JAY291 | rna-NM_001184133.1_JAY291 | cds-NP_015361.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:634371-635807:+ | gene-YPR036W_MUCL30387 | rna-NM_001184133.1_MUCL30387 | cds-NP_015361.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:633052-634488:+ | gene-YPR036W_MUCL30388 | rna-NM_001184133.1_MUCL30388 | cds-NP_015361.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:612439-613875:+ | gene-YPR036W_MUCL39482 | rna-NM_001184133.1_MUCL39482 | cds-NP_015361.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:675248-676684:+ | gene-YPR036W_MUCL42920 | rna-NM_001184133.1_MUCL42920 | cds-NP_015361.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:643819-645255:+ | gene-YPR036W_NCIM3186 | rna-NM_001184133.1_NCIM3186 | cds-NP_015361.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:620370-621806:+ | gene-YPR036W_NCYC1407 | rna-NM_001184133.1_NCYC1407 | cds-NP_015361.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:626597-628033:+ | gene-YPR036W_PE2H3 | rna-NM_001184133.1_PE2H3 | cds-NP_015361.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:626245-627681:+ | gene-YPR036W_PE2H4 | rna-NM_001184133.1_PE2H4 | cds-NP_015361.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:643836-645272:+ | gene-YPR036W_S288C | rna-NM_001184133.1_S288C | cds-NP_015361.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:55501-56937:- | gene-YPR036W_SA1 | rna-NM_001184133.1_SA1 | cds-NP_015361.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:621029-622465:+ | gene-YPR036W_ThermosaccDry | rna-NM_001184133.1_ThermosaccDry | cds-NP_015361.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:637258-638694:+ | gene-YPR036W_VR1 | rna-NM_001184133.1_VR1 | cds-NP_015361.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:620347-621783:+ | gene-YPR036W_ZTW1 | rna-NM_001184133.1_ZTW1 | cds-NP_015361.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:621131-622567:+ | gene-YPR036W_Sparadoxus | rna-NM_001184133.1_Sparadoxus | cds-NP_015361.1_Sparadoxus | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |