Gene name: VMA11
Reference locus (S288C): YPL234C
Gene biotype: protein_coding
Description: Vacuolar ATPase V0 domain subunit c'; involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen
Top 10 interactors (score): VMA13 (0.999); STV1 (0.999); VMA7 (0.999); VPH1 (0.999); VMA1 (0.999); VMA6 (0.999); VMA5 (0.999); VMA2 (0.999); VMA8 (0.999); VMA4 (0.999); VMA10 (0.999); VMA16 (0.998); VMA3 (0.995); ATP1 (0.994); ATP6 (0.992); ATP16 (0.99); ATP3 (0.99); VMA9 (0.986); ATP5 (0.986); ATP2 (0.979)
Homologues (species, bitscore): ATP6V0C (Homo sapiens, 183.3); Atp6v0c (Mus musculus, 183.0); atp6v0cb (Danio rerio, 188.7); atp6v0c (Xenopus tropicalis, 187.6); Vha16-1 (Drosophila melanogaster, 197.2); vha-2 (Caenorhabditis elegans, 175.3); AVA-P2 (Arabidopsis thaliana, 184.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:82696-83190:- | gene-YPL234C_AKU4011 | rna-NM_001184048.1_AKU4011 | cds-NP_015090.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:288637-289131:- | gene-YPL234C_BG1 | rna-NM_001184048.1_BG1 | cds-NP_015090.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:107904-108398:- | gene-YPL234C_Bruggeman | rna-NM_001184048.1_Bruggeman | cds-NP_015090.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:104943-105437:- | gene-YPL234C_CAT1 | rna-NM_001184048.1_CAT1 | cds-NP_015090.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:87009-87503:- | gene-YPL234C_CBS1585 | rna-NM_001184048.1_CBS1585 | cds-NP_015090.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:101428-101922:- | gene-YPL234C_CBS436 | rna-NM_001184048.1_CBS436 | cds-NP_015090.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:92173-92667:- | gene-YPL234C_CBS6412 | rna-NM_001184048.1_CBS6412 | cds-NP_015090.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:83159-83653:- | gene-YPL234C_CBS6413 | rna-NM_001184048.1_CBS6413 | cds-NP_015090.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:104874-105368:- | gene-YPL234C_CENPK1137D | rna-NM_001184048.1_CENPK1137D | cds-NP_015090.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:82094-82588:- | gene-YPL234C_EthanolRed | rna-NM_001184048.1_EthanolRed | cds-NP_015090.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:88901-89395:- | gene-YPL234C_FaliES1 | rna-NM_001184048.1_FaliES1 | cds-NP_015090.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:21129-21623:+ | gene-YPL234C_JAY291 | rna-NM_001184048.1_JAY291 | cds-NP_015090.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:99742-100236:- | gene-YPL234C_MUCL30387 | rna-NM_001184048.1_MUCL30387 | cds-NP_015090.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:98180-98674:- | gene-YPL234C_MUCL30388 | rna-NM_001184048.1_MUCL30388 | cds-NP_015090.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:80139-80633:- | gene-YPL234C_MUCL39482 | rna-NM_001184048.1_MUCL39482 | cds-NP_015090.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:99010-99504:- | gene-YPL234C_MUCL42920 | rna-NM_001184048.1_MUCL42920 | cds-NP_015090.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:104929-105423:- | gene-YPL234C_NCIM3186 | rna-NM_001184048.1_NCIM3186 | cds-NP_015090.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:86585-87079:- | gene-YPL234C_NCYC1407 | rna-NM_001184048.1_NCYC1407 | cds-NP_015090.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:94317-94811:- | gene-YPL234C_PE2H3 | rna-NM_001184048.1_PE2H3 | cds-NP_015090.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:93960-94454:- | gene-YPL234C_PE2H4 | rna-NM_001184048.1_PE2H4 | cds-NP_015090.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:104946-105440:- | gene-YPL234C_S288C | rna-NM_001184048.1_S288C | cds-NP_015090.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:46826-47320:- | gene-YPL234C_SA1 | rna-NM_001184048.1_SA1 | cds-NP_015090.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:88902-89396:- | gene-YPL234C_ThermosaccDry | rna-NM_001184048.1_ThermosaccDry | cds-NP_015090.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:328782-329276:- | gene-YPL234C_VR1 | rna-NM_001184048.1_VR1 | cds-NP_015090.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:88444-88938:- | gene-YPL234C_ZTW1 | rna-NM_001184048.1_ZTW1 | cds-NP_015090.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:89968-90462:- | gene-YPL234C_Sparadoxus | rna-NM_001184048.1_Sparadoxus | cds-NP_015090.1_Sparadoxus | 96.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |