Gene name: VMA10
Reference locus (S288C): YHR039C-A
Gene biotype: protein_coding
Description: Subunit G of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; involved in vacuolar acidification; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits
Top 10 interactors (score): VMA8 (0.999); VMA3 (0.999); VMA2 (0.999); VMA5 (0.999); VMA16 (0.999); VMA4 (0.999); VMA11 (0.999); STV1 (0.999); VMA13 (0.999); VPH1 (0.999); VMA7 (0.999); VMA1 (0.999); VMA6 (0.999); VMA9 (0.985); SGT2 (0.964); PEP3 (0.962); ATP6 (0.95); ATP7 (0.947); ATP2 (0.937); ATP1 (0.934)
Homologues (species, bitscore): ATP6V1G1 (Homo sapiens, 67.8); Atp6v1g1 (Mus musculus, 68.2); atp6v1g1 (Danio rerio, 59.7); atp6v1g2 (Xenopus tropicalis, 68.2); Vha13 (Drosophila melanogaster, 68.2); vha-10 (Caenorhabditis elegans, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:175433-175939:- | gene-YHR039C-A_AKU4011 | rna-NM_001180027.1_AKU4011 | cds-NP_011905.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:95650-96156:- | gene-YHR039C-A_BG1 | rna-NM_001180027.1_BG1 | cds-NP_011905.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:182878-183384:- | gene-YHR039C-A_Bruggeman | rna-NM_001180027.1_Bruggeman | cds-NP_011905.1_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:177263-177769:- | gene-YHR039C-A_CAT1 | rna-NM_001180027.1_CAT1 | cds-NP_011905.1_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:175807-176313:- | gene-YHR039C-A_CBS1585 | rna-NM_001180027.1_CBS1585 | cds-NP_011905.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:170046-170552:- | gene-YHR039C-A_CBS436 | rna-NM_001180027.1_CBS436 | cds-NP_011905.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:174775-175281:- | gene-YHR039C-A_CBS6412 | rna-NM_001180027.1_CBS6412 | cds-NP_011905.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:175611-176117:- | gene-YHR039C-A_CBS6413 | rna-NM_001180027.1_CBS6413 | cds-NP_011905.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:180436-180942:- | gene-YHR039C-A_CENPK1137D | rna-NM_001180027.1_CENPK1137D | cds-NP_011905.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:174937-175443:- | gene-YHR039C-A_EthanolRed | rna-NM_001180027.1_EthanolRed | cds-NP_011905.1_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:175914-176420:- | gene-YHR039C-A_FaliES1 | rna-NM_001180027.1_FaliES1 | cds-NP_011905.1_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:5207-5713:+ | gene-YHR039C-A_JAY291 | rna-NM_001180027.1_JAY291 | cds-NP_011905.1_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:181947-182453:- | gene-YHR039C-A_MUCL30387 | rna-NM_001180027.1_MUCL30387 | cds-NP_011905.1_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:182418-182924:- | gene-YHR039C-A_MUCL30388 | rna-NM_001180027.1_MUCL30388 | cds-NP_011905.1_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:174832-175338:- | gene-YHR039C-A_MUCL39482 | rna-NM_001180027.1_MUCL39482 | cds-NP_011905.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:181505-182011:- | gene-YHR039C-A_MUCL42920 | rna-NM_001180027.1_MUCL42920 | cds-NP_011905.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:187055-187561:- | gene-YHR039C-A_NCIM3186 | rna-NM_001180027.1_NCIM3186 | cds-NP_011905.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:174706-175212:- | gene-YHR039C-A_NCYC1407 | rna-NM_001180027.1_NCYC1407 | cds-NP_011905.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:177042-177548:- | gene-YHR039C-A_PE2H3 | rna-NM_001180027.1_PE2H3 | cds-NP_011905.1_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:184489-184995:- | gene-YHR039C-A_PE2H4 | rna-NM_001180027.1_PE2H4 | cds-NP_011905.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:187173-187679:- | gene-YHR039C-A_S288C | rna-NM_001180027.1_S288C | cds-NP_011905.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:170897-171403:+ | gene-YHR039C-A_SA1 | rna-NM_001180027.1_SA1 | cds-NP_011905.1_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:177005-177511:- | gene-YHR039C-A_ThermosaccDry | rna-NM_001180027.1_ThermosaccDry | cds-NP_011905.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:183540-184046:- | gene-YHR039C-A_VR1 | rna-NM_001180027.1_VR1 | cds-NP_011905.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:168554-169060:- | gene-YHR039C-A_ZTW1 | rna-NM_001180027.1_ZTW1 | cds-NP_011905.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:174630-175139:- | gene-YHR039C-A_Sparadoxus | rna-NM_001180027.1_Sparadoxus | cds-NP_011905.1_Sparadoxus | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |