Gene name: VID30
Reference locus (S288C): YGL227W
Gene biotype: protein_coding
Description: Vacuolar import and degradation protein 30; Central component of GID Complex, involved in FBPase degradation; interacts strongly with Gid8p to serve as a scaffold for other GID Complex subunits; contains SPRY domain and 3 domains that are also found in Gid8p - LisH, CTLH, and CRA; required for association of Vid vesicles and actin patches in vacuole import and degradation pathway; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm
Top 10 interactors (score): RMD5 (0.999); VID28 (0.999); FYV10 (0.999); GID8 (0.999); VID24 (0.999); GID7 (0.999); YGR066C (0.873); YDL176W (0.848); FBP1 (0.835); UBC8 (0.834); MOH1 (0.813); URN1 (0.746); MDH2 (0.746); YLR345W (0.731); SEC28 (0.712); LST8 (0.695); YDR262W (0.694); WWM1 (0.671); ICL1 (0.618); VID22 (0.617)
Homologues (species, bitscore): RANBP10 (Homo sapiens, 90.1); Ranbp10 (Mus musculus, 91.3); ranbp10 (Danio rerio, 91.7); ranbp9 (Xenopus tropicalis, 85.5); RanBPM (Drosophila melanogaster, 76.6); Y54E5A.7 (Caenorhabditis elegans, 70.1); RanBPM (Arabidopsis thaliana, 61.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:71190-74066:+ | gene-YGL227W_AKU4011 | rna-NM_001181093.1_AKU4011 | cds-NP_011287.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:63249-66125:+ | gene-YGL227W_BG1 | rna-NM_001181093.1_BG1 | cds-NP_011287.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:71554-74430:+ | gene-YGL227W_Bruggeman | rna-NM_001181093.1_Bruggeman | cds-NP_011287.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:69634-72510:+ | gene-YGL227W_CAT1 | rna-NM_001181093.1_CAT1 | cds-NP_011287.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:75472-78348:+ | gene-YGL227W_CBS1585 | rna-NM_001181093.1_CBS1585 | cds-NP_011287.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:70230-73106:+ | gene-YGL227W_CBS436 | rna-NM_001181093.1_CBS436 | cds-NP_011287.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:63042-65918:+ | gene-YGL227W_CBS6412 | rna-NM_001181093.1_CBS6412 | cds-NP_011287.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:69335-72211:+ | gene-YGL227W_CBS6413 | rna-NM_001181093.1_CBS6413 | cds-NP_011287.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:69509-72385:+ | gene-YGL227W_CENPK1137D | rna-NM_001181093.1_CENPK1137D | cds-NP_011287.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:62277-65153:+ | gene-YGL227W_EthanolRed | rna-NM_001181093.1_EthanolRed | cds-NP_011287.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:62862-65738:+ | gene-YGL227W_FaliES1 | rna-NM_001181093.1_FaliES1 | cds-NP_011287.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000079.1:1368-4244:- | gene-YGL227W_JAY291 | rna-NM_001181093.1_JAY291 | cds-NP_011287.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:71482-74358:+ | gene-YGL227W_MUCL30387 | rna-NM_001181093.1_MUCL30387 | cds-NP_011287.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:73645-76521:+ | gene-YGL227W_MUCL30388 | rna-NM_001181093.1_MUCL30388 | cds-NP_011287.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:72069-74945:+ | gene-YGL227W_MUCL39482 | rna-NM_001181093.1_MUCL39482 | cds-NP_011287.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:74965-77841:+ | gene-YGL227W_MUCL42920 | rna-NM_001181093.1_MUCL42920 | cds-NP_011287.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:69671-72547:+ | gene-YGL227W_NCIM3186 | rna-NM_001181093.1_NCIM3186 | cds-NP_011287.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:63830-66706:+ | gene-YGL227W_NCYC1407 | rna-NM_001181093.1_NCYC1407 | cds-NP_011287.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:65713-68589:+ | gene-YGL227W_PE2H3 | rna-NM_001181093.1_PE2H3 | cds-NP_011287.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:65261-68137:+ | gene-YGL227W_PE2H4 | rna-NM_001181093.1_PE2H4 | cds-NP_011287.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:69671-72547:+ | gene-YGL227W_S288C | rna-NM_001181093.1_S288C | cds-NP_011287.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:302771-305647:- | gene-YGL227W_SA1 | rna-NM_001181093.1_SA1 | cds-NP_011287.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:63168-66044:+ | gene-YGL227W_ThermosaccDry | rna-NM_001181093.1_ThermosaccDry | cds-NP_011287.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:70153-73029:+ | gene-YGL227W_VR1 | rna-NM_001181093.1_VR1 | cds-NP_011287.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:62210-65086:+ | gene-YGL227W_ZTW1 | rna-NM_001181093.1_ZTW1 | cds-NP_011287.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:70807-73686:+ | gene-YGL227W_Sparadoxus | rna-NM_001181093.1_Sparadoxus | cds-NP_011287.1_Sparadoxus | 88.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |