Gene name: VID28
Reference locus (S288C): YIL017C
Gene biotype: protein_coding
Description: Vacuolar import and degradation protein 28; GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm
Top 10 interactors (score): GID7 (0.999); VID24 (0.999); RMD5 (0.999); FYV10 (0.999); GID8 (0.999); VID30 (0.999); CUE5 (0.904); CAR1 (0.9); POT1 (0.9); DCK1 (0.9); BUD16 (0.9); KAP95 (0.9); UBC8 (0.869); YGR066C (0.858); GYP6 (0.788); FBP1 (0.736); YDR262W (0.713); USO1 (0.712); MOH1 (0.7); YDL176W (0.695)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:316659-319424:- | gene-YIL017C_AKU4011 | rna-NM_001179367.3_AKU4011 | cds-NP_012247.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000107.1:447-3212:- | gene-YIL017C_BG1 | rna-NM_001179367.3_BG1 | cds-NP_012247.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:321802-324567:- | gene-YIL017C_Bruggeman | rna-NM_001179367.3_Bruggeman | cds-NP_012247.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:309218-311983:- | gene-YIL017C_CAT1 | rna-NM_001179367.3_CAT1 | cds-NP_012247.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:316750-319515:- | gene-YIL017C_CBS1585 | rna-NM_001179367.3_CBS1585 | cds-NP_012247.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:310182-312947:- | gene-YIL017C_CBS436 | rna-NM_001179367.3_CBS436 | cds-NP_012247.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:312282-315047:- | gene-YIL017C_CBS6412 | rna-NM_001179367.3_CBS6412 | cds-NP_012247.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:308664-311429:- | gene-YIL017C_CBS6413 | rna-NM_001179367.3_CBS6413 | cds-NP_012247.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:310110-312875:- | gene-YIL017C_CENPK1137D | rna-NM_001179367.3_CENPK1137D | cds-NP_012247.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:299624-302389:- | gene-YIL017C_EthanolRed | rna-NM_001179367.3_EthanolRed | cds-NP_012247.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:317535-320300:- | gene-YIL017C_FaliES1 | rna-NM_001179367.3_FaliES1 | cds-NP_012247.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000189.1:3361-6126:+ | gene-YIL017C_JAY291 | rna-NM_001179367.3_JAY291 | cds-NP_012247.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:318652-321417:- | gene-YIL017C_MUCL30387 | rna-NM_001179367.3_MUCL30387 | cds-NP_012247.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:314757-317522:- | gene-YIL017C_MUCL30388 | rna-NM_001179367.3_MUCL30388 | cds-NP_012247.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:317339-320104:- | gene-YIL017C_MUCL39482 | rna-NM_001179367.3_MUCL39482 | cds-NP_012247.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:320473-323238:- | gene-YIL017C_MUCL42920 | rna-NM_001179367.3_MUCL42920 | cds-NP_012247.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:318200-320965:- | gene-YIL017C_NCIM3186 | rna-NM_001179367.3_NCIM3186 | cds-NP_012247.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:321612-324377:- | gene-YIL017C_NCYC1407 | rna-NM_001179367.3_NCYC1407 | cds-NP_012247.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:313253-316018:- | gene-YIL017C_PE2H3 | rna-NM_001179367.3_PE2H3 | cds-NP_012247.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:307959-310724:- | gene-YIL017C_PE2H4 | rna-NM_001179367.3_PE2H4 | cds-NP_012247.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:318200-320965:- | gene-YIL017C_S288C | rna-NM_001179367.3_S288C | cds-NP_012247.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:3567-6332:+ | gene-YIL017C_SA1 | rna-NM_001179367.3_SA1 | cds-NP_012247.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:316205-318970:- | gene-YIL017C_ThermosaccDry | rna-NM_001179367.3_ThermosaccDry | cds-NP_012247.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:312842-315607:- | gene-YIL017C_VR1 | rna-NM_001179367.3_VR1 | cds-NP_012247.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:290626-293391:- | gene-YIL017C_ZTW1 | rna-NM_001179367.3_ZTW1 | cds-NP_012247.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:311326-314088:- | gene-YIL017C_Sparadoxus | rna-NM_001179367.3_Sparadoxus | cds-NP_012247.3_Sparadoxus | 88.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |