VID28 (YIL017C)


Gene profile

Gene name: VID28
Reference locus (S288C): YIL017C
Gene biotype: protein_coding

Description: Vacuolar import and degradation protein 28; GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm

Top 10 interactors (score): GID7 (0.999); VID24 (0.999); RMD5 (0.999); FYV10 (0.999); GID8 (0.999); VID30 (0.999); CUE5 (0.904); CAR1 (0.9); POT1 (0.9); DCK1 (0.9); BUD16 (0.9); KAP95 (0.9); UBC8 (0.869); YGR066C (0.858); GYP6 (0.788); FBP1 (0.736); YDR262W (0.713); USO1 (0.712); MOH1 (0.7); YDL176W (0.695)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005303.1:316659-319424:- gene-YIL017C_AKU4011 rna-NM_001179367.3_AKU4011 cds-NP_012247.3_AKU4011 99.5 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000107.1:447-3212:- gene-YIL017C_BG1 rna-NM_001179367.3_BG1 cds-NP_012247.3_BG1 99.8 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005511.1:321802-324567:- gene-YIL017C_Bruggeman rna-NM_001179367.3_Bruggeman cds-NP_012247.3_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005527.1:309218-311983:- gene-YIL017C_CAT1 rna-NM_001179367.3_CAT1 cds-NP_012247.3_CAT1 99.8 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005367.1:316750-319515:- gene-YIL017C_CBS1585 rna-NM_001179367.3_CBS1585 cds-NP_012247.3_CBS1585 99.5 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005351.1:310182-312947:- gene-YIL017C_CBS436 rna-NM_001179367.3_CBS436 cds-NP_012247.3_CBS436 99.7 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005335.1:312282-315047:- gene-YIL017C_CBS6412 rna-NM_001179367.3_CBS6412 cds-NP_012247.3_CBS6412 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005319.1:308664-311429:- gene-YIL017C_CBS6413 rna-NM_001179367.3_CBS6413 cds-NP_012247.3_CBS6413 99.5 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001530.1:310110-312875:- gene-YIL017C_CENPK1137D rna-NM_001179367.3_CENPK1137D cds-NP_012247.3_CENPK1137D 99.5 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005479.1:299624-302389:- gene-YIL017C_EthanolRed rna-NM_001179367.3_EthanolRed cds-NP_012247.3_EthanolRed 99.5 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005543.1:317535-320300:- gene-YIL017C_FaliES1 rna-NM_001179367.3_FaliES1 cds-NP_012247.3_FaliES1 99.5 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000189.1:3361-6126:+ gene-YIL017C_JAY291 rna-NM_001179367.3_JAY291 cds-NP_012247.3_JAY291 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005415.1:318652-321417:- gene-YIL017C_MUCL30387 rna-NM_001179367.3_MUCL30387 cds-NP_012247.3_MUCL30387 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005447.1:314757-317522:- gene-YIL017C_MUCL30388 rna-NM_001179367.3_MUCL30388 cds-NP_012247.3_MUCL30388 99.7 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005287.1:317339-320104:- gene-YIL017C_MUCL39482 rna-NM_001179367.3_MUCL39482 cds-NP_012247.3_MUCL39482 99.5 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005431.1:320473-323238:- gene-YIL017C_MUCL42920 rna-NM_001179367.3_MUCL42920 cds-NP_012247.3_MUCL42920 99.5 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011818.1:318200-320965:- gene-YIL017C_NCIM3186 rna-NM_001179367.3_NCIM3186 cds-NP_012247.3_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005271.1:321612-324377:- gene-YIL017C_NCYC1407 rna-NM_001179367.3_NCYC1407 cds-NP_012247.3_NCYC1407 99.5 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994148.1:313253-316018:- gene-YIL017C_PE2H3 rna-NM_001179367.3_PE2H3 cds-NP_012247.3_PE2H3 99.8 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999880.1:307959-310724:- gene-YIL017C_PE2H4 rna-NM_001179367.3_PE2H4 cds-NP_012247.3_PE2H4 99.8 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001141.2:318200-320965:- gene-YIL017C_S288C rna-NM_001179367.3_S288C cds-NP_012247.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000031.1:3567-6332:+ gene-YIL017C_SA1 rna-NM_001179367.3_SA1 cds-NP_012247.3_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005495.1:316205-318970:- gene-YIL017C_ThermosaccDry rna-NM_001179367.3_ThermosaccDry cds-NP_012247.3_ThermosaccDry 99.5 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005463.1:312842-315607:- gene-YIL017C_VR1 rna-NM_001179367.3_VR1 cds-NP_012247.3_VR1 99.3 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000019.1:290626-293391:- gene-YIL017C_ZTW1 rna-NM_001179367.3_ZTW1 cds-NP_012247.3_ZTW1 99.5 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047495.1:311326-314088:- gene-YIL017C_Sparadoxus rna-NM_001179367.3_Sparadoxus cds-NP_012247.3_Sparadoxus 88.9 99.8 Verified 1 1 1 False True False False False

Additional files