Gene name: VID24
Reference locus (S288C): YBR105C
Gene biotype: protein_coding
Description: Vacuolar import and degradation protein 24; GID Complex regulatory subunit; binds GID Complex in response to glucose through interactions with complex member Vid28p; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; promotes proteasome-dependent catabolite degradation of FBPase; peripheral membrane protein located at Vid (vacuole import and degradation) vesicles; To yeast YGR066c and S.pombe SpAC3H1.14
Top 10 interactors (score): VID30 (0.999); FYV10 (0.999); VID28 (0.999); GID8 (0.999); RMD5 (0.998); GID7 (0.998); ICL1 (0.894); SEC28 (0.86); FBP1 (0.833); MDH2 (0.817); UBC8 (0.778); YOR338W (0.732); YGR066C (0.714); UBC1 (0.678); ARD1 (0.66); APL5 (0.65); AQR1 (0.647); YDL176W (0.634); NVJ3 (0.62); YBL029W (0.615)
Homologues (species, bitscore): GID4 (Homo sapiens, 96.3); Gid4 (Mus musculus, 95.9); GID4 (Danio rerio, 93.2); gid4 (Xenopus tropicalis, 94.4); AT2G37680 (Arabidopsis thaliana, 62.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:433243-434331:- | gene-YBR105C_AKU4011 | rna-NM_001178453.1_AKU4011 | cds-NP_009663.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:424285-425373:- | gene-YBR105C_BG1 | rna-NM_001178453.1_BG1 | cds-NP_009663.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:435021-436109:- | gene-YBR105C_Bruggeman | rna-NM_001178453.1_Bruggeman | cds-NP_009663.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:437791-438879:- | gene-YBR105C_CAT1 | rna-NM_001178453.1_CAT1 | cds-NP_009663.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:425528-426616:- | gene-YBR105C_CBS1585 | rna-NM_001178453.1_CBS1585 | cds-NP_009663.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:433650-434738:- | gene-YBR105C_CBS436 | rna-NM_001178453.1_CBS436 | cds-NP_009663.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:523756-524844:- | gene-YBR105C_CBS6412 | rna-NM_001178453.1_CBS6412 | cds-NP_009663.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:430667-431755:- | gene-YBR105C_CBS6413 | rna-NM_001178453.1_CBS6413 | cds-NP_009663.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:442781-443869:- | gene-YBR105C_CENPK1137D | rna-NM_001178453.1_CENPK1137D | cds-NP_009663.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:560038-561126:- | gene-YBR105C_EthanolRed | rna-NM_001178453.1_EthanolRed | cds-NP_009663.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:449321-450409:- | gene-YBR105C_FaliES1 | rna-NM_001178453.1_FaliES1 | cds-NP_009663.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:20225-21313:- | gene-YBR105C_JAY291 | rna-NM_001178453.1_JAY291 | cds-NP_009663.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:437056-438144:- | gene-YBR105C_MUCL30387 | rna-NM_001178453.1_MUCL30387 | cds-NP_009663.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:436055-437143:- | gene-YBR105C_MUCL30388 | rna-NM_001178453.1_MUCL30388 | cds-NP_009663.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:423671-424759:- | gene-YBR105C_MUCL39482 | rna-NM_001178453.1_MUCL39482 | cds-NP_009663.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:432735-433823:- | gene-YBR105C_MUCL42920 | rna-NM_001178453.1_MUCL42920 | cds-NP_009663.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:450678-451766:- | gene-YBR105C_NCIM3186 | rna-NM_001178453.1_NCIM3186 | cds-NP_009663.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:426450-427538:- | gene-YBR105C_NCYC1407 | rna-NM_001178453.1_NCYC1407 | cds-NP_009663.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:439070-440158:- | gene-YBR105C_PE2H3 | rna-NM_001178453.1_PE2H3 | cds-NP_009663.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:436746-437834:- | gene-YBR105C_PE2H4 | rna-NM_001178453.1_PE2H4 | cds-NP_009663.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:450881-451969:- | gene-YBR105C_S288C | rna-NM_001178453.1_S288C | cds-NP_009663.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:25742-26830:+ | gene-YBR105C_SA1 | rna-NM_001178453.1_SA1 | cds-NP_009663.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:448328-449416:- | gene-YBR105C_ThermosaccDry | rna-NM_001178453.1_ThermosaccDry | cds-NP_009663.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:430331-431419:- | gene-YBR105C_VR1 | rna-NM_001178453.1_VR1 | cds-NP_009663.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:423988-425076:- | gene-YBR105C_ZTW1 | rna-NM_001178453.1_ZTW1 | cds-NP_009663.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:460923-462014:- | gene-YBR105C_Sparadoxus | rna-NM_001178453.1_Sparadoxus | cds-NP_009663.1_Sparadoxus | 87.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |