Gene name: VID22
Reference locus (S288C): YLR373C
Gene biotype: protein_coding
Description: Vacuolar import and degradation protein 22; Glycosylated integral membrane protein localized to plasma membrane; plays a role in fructose-1,6-bisphosphatase (FBPase) degradation; involved in FBPase transport from the cytosol to Vid (vacuole import and degradation) vesicles; VID22 has a paralog, ENV11, that arose from the whole genome duplication
Top 10 interactors (score): TBF1 (0.988); SGS1 (0.773); ENV11 (0.76); API2 (0.7); SEC28 (0.634); YKL023W (0.619); MMS4 (0.618); VID30 (0.617); VID24 (0.615); MUS81 (0.601); PSD1 (0.526); RNH203 (0.524); RNH202 (0.521); MGS1 (0.504); HPR1 (0.499); RSF1 (0.487); GSM1 (0.482); BUD31 (0.465); UBC1 (0.461); SIP5 (0.452)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:818197-820902:- | gene-YLR373C_AKU4011 | rna-NM_001182262.1_AKU4011 | cds-NP_013477.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:50348-53053:- | gene-YLR373C_BG1 | rna-NM_001182262.1_BG1 | cds-NP_013477.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:856531-859236:- | gene-YLR373C_Bruggeman | rna-NM_001182262.1_Bruggeman | cds-NP_013477.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:852024-854729:- | gene-YLR373C_CAT1 | rna-NM_001182262.1_CAT1 | cds-NP_013477.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:853187-855892:- | gene-YLR373C_CBS1585 | rna-NM_001182262.1_CBS1585 | cds-NP_013477.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:837429-840134:- | gene-YLR373C_CBS436 | rna-NM_001182262.1_CBS436 | cds-NP_013477.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:890209-892914:- | gene-YLR373C_CBS6412 | rna-NM_001182262.1_CBS6412 | cds-NP_013477.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:854080-856785:- | gene-YLR373C_CBS6413 | rna-NM_001182262.1_CBS6413 | cds-NP_013477.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:853396-856138:- | gene-YLR373C_CENPK1137D | rna-NM_001182262.1_CENPK1137D | cds-NP_013477.1_CENPK1137D | 97.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:810778-813483:- | gene-YLR373C_EthanolRed | rna-NM_001182262.1_EthanolRed | cds-NP_013477.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:839583-842288:- | gene-YLR373C_FaliES1 | rna-NM_001182262.1_FaliES1 | cds-NP_013477.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:50167-52872:- | gene-YLR373C_JAY291 | rna-NM_001182262.1_JAY291 | cds-NP_013477.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:853935-856640:- | gene-YLR373C_MUCL30387 | rna-NM_001182262.1_MUCL30387 | cds-NP_013477.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:859565-862270:- | gene-YLR373C_MUCL30388 | rna-NM_001182262.1_MUCL30388 | cds-NP_013477.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:854406-857111:- | gene-YLR373C_MUCL39482 | rna-NM_001182262.1_MUCL39482 | cds-NP_013477.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:849703-852408:- | gene-YLR373C_MUCL42920 | rna-NM_001182262.1_MUCL42920 | cds-NP_013477.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:868636-871341:- | gene-YLR373C_NCIM3186 | rna-NM_001182262.1_NCIM3186 | cds-NP_013477.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:863628-866333:- | gene-YLR373C_NCYC1407 | rna-NM_001182262.1_NCYC1407 | cds-NP_013477.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:850586-853291:- | gene-YLR373C_PE2H3 | rna-NM_001182262.1_PE2H3 | cds-NP_013477.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:850330-853035:- | gene-YLR373C_PE2H4 | rna-NM_001182262.1_PE2H4 | cds-NP_013477.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:868662-871367:- | gene-YLR373C_S288C | rna-NM_001182262.1_S288C | cds-NP_013477.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:177325-180030:+ | gene-YLR373C_SA1 | rna-NM_001182262.1_SA1 | cds-NP_013477.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:842664-845369:- | gene-YLR373C_ThermosaccDry | rna-NM_001182262.1_ThermosaccDry | cds-NP_013477.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:855676-858381:- | gene-YLR373C_VR1 | rna-NM_001182262.1_VR1 | cds-NP_013477.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:179850-182555:- | gene-YLR373C_ZTW1 | rna-NM_001182262.1_ZTW1 | cds-NP_013477.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:828555-831251:- | gene-YLR373C_Sparadoxus | rna-NM_001182262.1_Sparadoxus | cds-NP_013477.1_Sparadoxus | 90.0 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |