Gene name: VHR2
Reference locus (S288C): YER064C
Gene biotype: protein_coding
Description: Transcription factor VHR2; Non-essential nuclear protein; null mutation has global effects on transcription; VHR2 has a paralog, VHR1, that arose from the whole genome duplication; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): YKR023W (0.653); RFU1 (0.615); ECL1 (0.612); SLK19 (0.568); MSC2 (0.527); VHT1 (0.521); WHI3 (0.5); APE3 (0.497); AVO2 (0.495); YGL039W (0.495); HTB1 (0.483); PSH1 (0.48); PMU1 (0.463); ZAP1 (0.453); YEH2 (0.453); BIO5 (0.45); SET3 (0.42)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:276499-278016:- | gene-YER064C_AKU4011 | rna-NM_001178955.1_AKU4011 | cds-NP_010986.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:147759-149276:+ | gene-YER064C_BG1 | rna-NM_001178955.1_BG1 | cds-NP_010986.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:285811-287328:- | gene-YER064C_Bruggeman | rna-NM_001178955.1_Bruggeman | cds-NP_010986.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:279454-280971:- | gene-YER064C_CAT1 | rna-NM_001178955.1_CAT1 | cds-NP_010986.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:276355-277872:- | gene-YER064C_CBS1585 | rna-NM_001178955.1_CBS1585 | cds-NP_010986.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:278265-279782:- | gene-YER064C_CBS436 | rna-NM_001178955.1_CBS436 | cds-NP_010986.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:275825-277342:- | gene-YER064C_CBS6412 | rna-NM_001178955.1_CBS6412 | cds-NP_010986.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:281831-283348:- | gene-YER064C_CBS6413 | rna-NM_001178955.1_CBS6413 | cds-NP_010986.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:280555-282072:- | gene-YER064C_CENPK1137D | rna-NM_001178955.1_CENPK1137D | cds-NP_010986.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:276839-278356:- | gene-YER064C_EthanolRed | rna-NM_001178955.1_EthanolRed | cds-NP_010986.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:277292-278809:- | gene-YER064C_FaliES1 | rna-NM_001178955.1_FaliES1 | cds-NP_010986.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000254.1:4711-6228:- | gene-YER064C_JAY291 | rna-NM_001178955.1_JAY291 | cds-NP_010986.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:281248-282765:- | gene-YER064C_MUCL30387 | rna-NM_001178955.1_MUCL30387 | cds-NP_010986.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:276918-278435:- | gene-YER064C_MUCL30388 | rna-NM_001178955.1_MUCL30388 | cds-NP_010986.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:275390-276907:- | gene-YER064C_MUCL39482 | rna-NM_001178955.1_MUCL39482 | cds-NP_010986.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:282446-283963:- | gene-YER064C_MUCL42920 | rna-NM_001178955.1_MUCL42920 | cds-NP_010986.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:282704-284221:- | gene-YER064C_NCIM3186 | rna-NM_001178955.1_NCIM3186 | cds-NP_010986.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:280453-281970:- | gene-YER064C_NCYC1407 | rna-NM_001178955.1_NCYC1407 | cds-NP_010986.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:291106-292623:- | gene-YER064C_PE2H3 | rna-NM_001178955.1_PE2H3 | cds-NP_010986.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:281047-282564:- | gene-YER064C_PE2H4 | rna-NM_001178955.1_PE2H4 | cds-NP_010986.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:282705-284222:- | gene-YER064C_S288C | rna-NM_001178955.1_S288C | cds-NP_010986.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:69224-70741:- | gene-YER064C_SA1 | rna-NM_001178955.1_SA1 | cds-NP_010986.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:278088-279605:- | gene-YER064C_ThermosaccDry | rna-NM_001178955.1_ThermosaccDry | cds-NP_010986.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:277789-279306:- | gene-YER064C_VR1 | rna-NM_001178955.1_VR1 | cds-NP_010986.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:275268-276785:- | gene-YER064C_ZTW1 | rna-NM_001178955.1_ZTW1 | cds-NP_010986.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:279209-280726:- | gene-YER064C_Sparadoxus | rna-NM_001178955.1_Sparadoxus | cds-NP_010986.1_Sparadoxus | 86.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |