Gene name: VHR1
Reference locus (S288C): YIL056W
Gene biotype: protein_coding
Description: Transcription factor VHR1; Transcriptional activator; required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations; VHR1 has a paralog, VHR2, that arose from the whole genome duplication
Top 10 interactors (score): VHT1 (0.894); BIO5 (0.862); BIO4 (0.713); BIO2 (0.677); BIO3 (0.674); NQM1 (0.614); YHR045W (0.572); MRP8 (0.499); SNN1 (0.499); BOP3 (0.497); MOT3 (0.487); USB1 (0.481); YGR067C (0.481); STM1 (0.459); STB4 (0.451); COS111 (0.451); RGI2 (0.45); ECM5 (0.45); YIL177C (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:246821-248743:+ | gene-YIL056W_AKU4011 | rna-NM_001179406.1_AKU4011 | cds-NP_012208.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:108257-110179:+ | gene-YIL056W_BG1 | rna-NM_001179406.1_BG1 | cds-NP_012208.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:253072-254994:+ | gene-YIL056W_Bruggeman | rna-NM_001179406.1_Bruggeman | cds-NP_012208.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:240735-242657:+ | gene-YIL056W_CAT1 | rna-NM_001179406.1_CAT1 | cds-NP_012208.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:246650-248572:+ | gene-YIL056W_CBS1585 | rna-NM_001179406.1_CBS1585 | cds-NP_012208.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:241944-243866:+ | gene-YIL056W_CBS436 | rna-NM_001179406.1_CBS436 | cds-NP_012208.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:243261-245183:+ | gene-YIL056W_CBS6412 | rna-NM_001179406.1_CBS6412 | cds-NP_012208.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:238816-240738:+ | gene-YIL056W_CBS6413 | rna-NM_001179406.1_CBS6413 | cds-NP_012208.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:241701-243623:+ | gene-YIL056W_CENPK1137D | rna-NM_001179406.1_CENPK1137D | cds-NP_012208.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:230737-232659:+ | gene-YIL056W_EthanolRed | rna-NM_001179406.1_EthanolRed | cds-NP_012208.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:248276-250198:+ | gene-YIL056W_FaliES1 | rna-NM_001179406.1_FaliES1 | cds-NP_012208.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000365.1:48683-50605:- | gene-YIL056W_JAY291 | rna-NM_001179406.1_JAY291 | cds-NP_012208.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:249960-251882:+ | gene-YIL056W_MUCL30387 | rna-NM_001179406.1_MUCL30387 | cds-NP_012208.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:246563-248485:+ | gene-YIL056W_MUCL30388 | rna-NM_001179406.1_MUCL30388 | cds-NP_012208.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:247491-249413:+ | gene-YIL056W_MUCL39482 | rna-NM_001179406.1_MUCL39482 | cds-NP_012208.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:250104-252026:+ | gene-YIL056W_MUCL42920 | rna-NM_001179406.1_MUCL42920 | cds-NP_012208.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:249991-251913:+ | gene-YIL056W_NCIM3186 | rna-NM_001179406.1_NCIM3186 | cds-NP_012208.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:251766-253688:+ | gene-YIL056W_NCYC1407 | rna-NM_001179406.1_NCYC1407 | cds-NP_012208.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:245003-246925:+ | gene-YIL056W_PE2H3 | rna-NM_001179406.1_PE2H3 | cds-NP_012208.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:239716-241638:+ | gene-YIL056W_PE2H4 | rna-NM_001179406.1_PE2H4 | cds-NP_012208.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:249991-251913:+ | gene-YIL056W_S288C | rna-NM_001179406.1_S288C | cds-NP_012208.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:74259-76181:- | gene-YIL056W_SA1 | rna-NM_001179406.1_SA1 | cds-NP_012208.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:246945-248867:+ | gene-YIL056W_ThermosaccDry | rna-NM_001179406.1_ThermosaccDry | cds-NP_012208.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:244120-246042:+ | gene-YIL056W_VR1 | rna-NM_001179406.1_VR1 | cds-NP_012208.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:220792-222714:+ | gene-YIL056W_ZTW1 | rna-NM_001179406.1_ZTW1 | cds-NP_012208.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:242957-244882:+ | gene-YIL056W_Sparadoxus | rna-NM_001179406.1_Sparadoxus | cds-NP_012208.1_Sparadoxus | 90.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |