Gene name: VFA1
Reference locus (S288C): YER128W
Gene biotype: protein_coding
Description: VPS4-associated protein 1; Protein that interacts with Vps4p and has a role in vacuolar sorting; stimulates the ATPase activity of Vps4; localizes to endosomes in a Vps4-dependent manner; overexpression causes canavanine sensitivity and confers a partial class D vacuole morphology
Top 10 interactors (score): VPS4 (0.959); MIM2 (0.749); IST1 (0.713); EMP70 (0.694); VAB2 (0.692); RCR1 (0.69); VTA1 (0.645); PFA3 (0.611); IVY1 (0.61); GYP5 (0.572); MIM1 (0.529); PKR1 (0.526); VMA21 (0.522); YIP5 (0.521); VMA22 (0.497); SYN8 (0.489); VPS3 (0.482); VMA16 (0.481); VMA5 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:409735-410346:+ | gene-YER128W_AKU4011 | rna-NM_001179018.3_AKU4011 | cds-NP_011054.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:15308-15919:- | gene-YER128W_BG1 | rna-NM_001179018.3_BG1 | cds-NP_011054.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:420201-420812:+ | gene-YER128W_Bruggeman | rna-NM_001179018.3_Bruggeman | cds-NP_011054.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:415442-416053:+ | gene-YER128W_CAT1 | rna-NM_001179018.3_CAT1 | cds-NP_011054.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:409130-409741:+ | gene-YER128W_CBS1585 | rna-NM_001179018.3_CBS1585 | cds-NP_011054.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:411835-412446:+ | gene-YER128W_CBS436 | rna-NM_001179018.3_CBS436 | cds-NP_011054.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:408208-408819:+ | gene-YER128W_CBS6412 | rna-NM_001179018.3_CBS6412 | cds-NP_011054.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:415051-415662:+ | gene-YER128W_CBS6413 | rna-NM_001179018.3_CBS6413 | cds-NP_011054.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:413623-414234:+ | gene-YER128W_CENPK1137D | rna-NM_001179018.3_CENPK1137D | cds-NP_011054.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:409579-410190:+ | gene-YER128W_EthanolRed | rna-NM_001179018.3_EthanolRed | cds-NP_011054.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:410060-410671:+ | gene-YER128W_FaliES1 | rna-NM_001179018.3_FaliES1 | cds-NP_011054.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:18282-18893:+ | gene-YER128W_JAY291 | rna-NM_001179018.3_JAY291 | cds-NP_011054.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:417150-417761:+ | gene-YER128W_MUCL30387 | rna-NM_001179018.3_MUCL30387 | cds-NP_011054.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:412096-412707:+ | gene-YER128W_MUCL30388 | rna-NM_001179018.3_MUCL30388 | cds-NP_011054.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:408155-408766:+ | gene-YER128W_MUCL39482 | rna-NM_001179018.3_MUCL39482 | cds-NP_011054.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:416642-417253:+ | gene-YER128W_MUCL42920 | rna-NM_001179018.3_MUCL42920 | cds-NP_011054.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:415858-416469:+ | gene-YER128W_NCIM3186 | rna-NM_001179018.3_NCIM3186 | cds-NP_011054.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:413688-414299:+ | gene-YER128W_NCYC1407 | rna-NM_001179018.3_NCYC1407 | cds-NP_011054.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:424233-424844:+ | gene-YER128W_PE2H3 | rna-NM_001179018.3_PE2H3 | cds-NP_011054.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:414174-414785:+ | gene-YER128W_PE2H4 | rna-NM_001179018.3_PE2H4 | cds-NP_011054.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:415859-416470:+ | gene-YER128W_S288C | rna-NM_001179018.3_S288C | cds-NP_011054.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:125459-126070:+ | gene-YER128W_SA1 | rna-NM_001179018.3_SA1 | cds-NP_011054.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:410858-411469:+ | gene-YER128W_ThermosaccDry | rna-NM_001179018.3_ThermosaccDry | cds-NP_011054.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:411910-412521:+ | gene-YER128W_VR1 | rna-NM_001179018.3_VR1 | cds-NP_011054.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:407987-408598:+ | gene-YER128W_ZTW1 | rna-NM_001179018.3_ZTW1 | cds-NP_011054.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:411795-412409:+ | gene-YER128W_Sparadoxus | rna-NM_001179018.3_Sparadoxus | cds-NP_011054.3_Sparadoxus | 88.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |