Gene name: VCX1
Reference locus (S288C): YDL128W
Gene biotype: protein_coding
Description: Vacuolar calcium ion transporter; Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity; involved in control of cytosolic Ca2+ and K+ concentrations; has similarity to sodium/calcium exchangers, including the bovine Na+/Ca2+,K+ antiporter
Top 10 interactors (score): PMC1 (0.998); PMR1 (0.976); CCH1 (0.946); GDT1 (0.933); CRZ1 (0.92); MID1 (0.919); YVC1 (0.904); CNB1 (0.872); RCN1 (0.856); ENA1 (0.728); CNA1 (0.727); SPF1 (0.726); CMD1 (0.723); ECM7 (0.712); CMK2 (0.69); NHX1 (0.667); DPP1 (0.662); NSG1 (0.618); YPL162C (0.568); FRT2 (0.567)
Homologues (species, bitscore): cax1 (Danio rerio, 128.6); LOC100127794 (Xenopus tropicalis, 92.0); CAX5 (Arabidopsis thaliana, 271.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:217269-218504:+ | gene-YDL128W_AKU4011 | rna-NM_001180187.1_AKU4011 | cds-NP_010155.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:331479-332714:- | gene-YDL128W_BG1 | rna-NM_001180187.1_BG1 | cds-NP_010155.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:234420-235655:+ | gene-YDL128W_Bruggeman | rna-NM_001180187.1_Bruggeman | cds-NP_010155.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:231423-232658:+ | gene-YDL128W_CAT1 | rna-NM_001180187.1_CAT1 | cds-NP_010155.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:215534-216769:+ | gene-YDL128W_CBS1585 | rna-NM_001180187.1_CBS1585 | cds-NP_010155.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:232185-233420:+ | gene-YDL128W_CBS436 | rna-NM_001180187.1_CBS436 | cds-NP_010155.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:213959-215194:+ | gene-YDL128W_CBS6412 | rna-NM_001180187.1_CBS6412 | cds-NP_010155.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:233694-234929:+ | gene-YDL128W_CBS6413 | rna-NM_001180187.1_CBS6413 | cds-NP_010155.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:231424-232659:+ | gene-YDL128W_CENPK1137D | rna-NM_001180187.1_CENPK1137D | cds-NP_010155.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:228299-229534:+ | gene-YDL128W_EthanolRed | rna-NM_001180187.1_EthanolRed | cds-NP_010155.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:234269-235504:+ | gene-YDL128W_FaliES1 | rna-NM_001180187.1_FaliES1 | cds-NP_010155.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:4310-5545:+ | gene-YDL128W_JAY291 | rna-NM_001180187.1_JAY291 | cds-NP_010155.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:232475-233710:+ | gene-YDL128W_MUCL30387 | rna-NM_001180187.1_MUCL30387 | cds-NP_010155.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:223237-224472:+ | gene-YDL128W_MUCL30388 | rna-NM_001180187.1_MUCL30388 | cds-NP_010155.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:216636-217871:+ | gene-YDL128W_MUCL39482 | rna-NM_001180187.1_MUCL39482 | cds-NP_010155.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:138431-139666:+ | gene-YDL128W_MUCL42920 | rna-NM_001180187.1_MUCL42920 | cds-NP_010155.1_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:232575-233810:+ | gene-YDL128W_NCIM3186 | rna-NM_001180187.1_NCIM3186 | cds-NP_010155.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:216667-217902:+ | gene-YDL128W_NCYC1407 | rna-NM_001180187.1_NCYC1407 | cds-NP_010155.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:223411-224646:+ | gene-YDL128W_PE2H3 | rna-NM_001180187.1_PE2H3 | cds-NP_010155.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:223415-224650:+ | gene-YDL128W_PE2H4 | rna-NM_001180187.1_PE2H4 | cds-NP_010155.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:232652-233887:+ | gene-YDL128W_S288C | rna-NM_001180187.1_S288C | cds-NP_010155.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:201039-202274:- | gene-YDL128W_SA1 | rna-NM_001180187.1_SA1 | cds-NP_010155.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:233780-235015:+ | gene-YDL128W_ThermosaccDry | rna-NM_001180187.1_ThermosaccDry | cds-NP_010155.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:235885-237120:+ | gene-YDL128W_VR1 | rna-NM_001180187.1_VR1 | cds-NP_010155.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:231710-232945:+ | gene-YDL128W_ZTW1 | rna-NM_001180187.1_ZTW1 | cds-NP_010155.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:233808-235043:+ | gene-YDL128W_Sparadoxus | rna-NM_001180187.1_Sparadoxus | cds-NP_010155.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |