VBA5 (YKR105C)


Gene profile

Gene name: VBA5
Reference locus (S288C): YKR105C
Gene biotype: protein_coding

Description: Vacuolar basic amino acid transporter 5; Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication

Top 10 interactors (score): YGR259C (0.892); YMR279C (0.875); YNR063W (0.861); YER134C (0.848); AMF1 (0.815); GEX2 (0.802); DOS2 (0.779); ATR1 (0.768); GEX1 (0.738); VBA4 (0.736); CIS3 (0.646); AVT6 (0.618); YOR292C (0.617); OR26.14 (0.572); YPQ1 (0.57); RTC2 (0.563); BAP3 (0.563); RUP1 (0.481); ARN2 (0.476); GNP1 (0.464)

Homologues (species, bitscore): mfsd9 (Danio rerio, 52.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:9708-11460:+ gene-YKR105C_CAT1 rna-NM_001179895.3_CAT1 cds-NP_013031.3_CAT1 98.2 99.9 Verified 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia CM005337.1:640290-641670:- gene-YKR105C_CBS6412 rna-NM_001179895.3_CBS6412 cds-NP_013031.3_CBS6412 78.3 78.9 Unannotated 1 1 0 False False False True False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005473.1:9039-10787:+ gene-YKR105C_EthanolRed rna-NM_001179895.3_EthanolRed cds-NP_013031.3_EthanolRed 99.3 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005537.1:9058-10806:+ gene-YKR105C_FaliES1 rna-NM_001179895.3_FaliES1 cds-NP_013031.3_FaliES1 99.3 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005281.1:10886-12638:+ gene-YKR105C_MUCL39482 rna-NM_001179895.3_MUCL39482 cds-NP_013031.3_MUCL39482 97.3 99.5 Verified 1 1 0 False False False True False
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:9144-10892:+ gene-YKR105C_PE2H4 rna-NM_001179895.3_PE2H4 cds-NP_013031.3_PE2H4 99.2 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:658716-660464:- gene-YKR105C_S288C rna-NM_001179895.3_S288C cds-NP_013031.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:654080-655828:- gene-YKR105C_ZTW1 rna-NM_001179895.3_ZTW1 cds-NP_013031.3_ZTW1 99.4 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047489.1:38549-40297:+ gene-YKR105C_Sparadoxus rna-NM_001179895.3_Sparadoxus cds-NP_013031.3_Sparadoxus 89.1 100.0 Mismatch 1 1 1 False True False False False

Additional files