Gene name: VBA4
Reference locus (S288C): YDR119W
Gene biotype: protein_coding
Description: Protein of unknown function; proposed role as a basic amino acid permease based on phylogeny; GFP-fusion protein localizes to vacuolar membrane; physical interaction with Atg27p suggests a possible role in autophagy; non-essential gene
Top 10 interactors (score): VBA2 (0.864); YMR279C (0.815); AMF1 (0.805); GEX2 (0.762); YPL162C (0.744); VBA3 (0.741); VBA5 (0.736); YML018C (0.718); FMP42 (0.704); HOL1 (0.7); GEX1 (0.699); QDR3 (0.695); YPQ2 (0.692); ERC1 (0.675); ATR1 (0.62); ENB1 (0.618); AQR1 (0.615); YJL163C (0.611); COT1 (0.61); YPQ1 (0.572)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:659173-661479:+ | gene-YDR119W_AKU4011 | rna-NM_001180427.1_AKU4011 | cds-NP_010404.1_AKU4011 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:463406-465712:- | gene-YDR119W_BG1 | rna-NM_001180427.1_BG1 | cds-NP_010404.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:691233-693539:+ | gene-YDR119W_Bruggeman | rna-NM_001180427.1_Bruggeman | cds-NP_010404.1_Bruggeman | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:677962-680268:+ | gene-YDR119W_CAT1 | rna-NM_001180427.1_CAT1 | cds-NP_010404.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:650211-652517:+ | gene-YDR119W_CBS1585 | rna-NM_001180427.1_CBS1585 | cds-NP_010404.1_CBS1585 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:676086-678392:+ | gene-YDR119W_CBS436 | rna-NM_001180427.1_CBS436 | cds-NP_010404.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:646563-648869:+ | gene-YDR119W_CBS6412 | rna-NM_001180427.1_CBS6412 | cds-NP_010404.1_CBS6412 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:675539-677845:+ | gene-YDR119W_CBS6413 | rna-NM_001180427.1_CBS6413 | cds-NP_010404.1_CBS6413 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:680671-682977:+ | gene-YDR119W_CENPK1137D | rna-NM_001180427.1_CENPK1137D | cds-NP_010404.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:660940-663246:+ | gene-YDR119W_EthanolRed | rna-NM_001180427.1_EthanolRed | cds-NP_010404.1_EthanolRed | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:667734-670040:+ | gene-YDR119W_FaliES1 | rna-NM_001180427.1_FaliES1 | cds-NP_010404.1_FaliES1 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:19844-22150:+ | gene-YDR119W_JAY291 | rna-NM_001180427.1_JAY291 | cds-NP_010404.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:677157-679463:+ | gene-YDR119W_MUCL30387 | rna-NM_001180427.1_MUCL30387 | cds-NP_010404.1_MUCL30387 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:666176-668482:+ | gene-YDR119W_MUCL30388 | rna-NM_001180427.1_MUCL30388 | cds-NP_010404.1_MUCL30388 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:651552-653858:+ | gene-YDR119W_MUCL39482 | rna-NM_001180427.1_MUCL39482 | cds-NP_010404.1_MUCL39482 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:589516-591822:+ | gene-YDR119W_MUCL42920 | rna-NM_001180427.1_MUCL42920 | cds-NP_010404.1_MUCL42920 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:688150-690456:+ | gene-YDR119W_NCIM3186 | rna-NM_001180427.1_NCIM3186 | cds-NP_010404.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:650957-653263:+ | gene-YDR119W_NCYC1407 | rna-NM_001180427.1_NCYC1407 | cds-NP_010404.1_NCYC1407 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:670273-672579:+ | gene-YDR119W_PE2H3 | rna-NM_001180427.1_PE2H3 | cds-NP_010404.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:669578-671884:+ | gene-YDR119W_PE2H4 | rna-NM_001180427.1_PE2H4 | cds-NP_010404.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:688227-690533:+ | gene-YDR119W_S288C | rna-NM_001180427.1_S288C | cds-NP_010404.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:36889-39195:+ | gene-YDR119W_SA1 | rna-NM_001180427.1_SA1 | cds-NP_010404.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:667256-669562:+ | gene-YDR119W_ThermosaccDry | rna-NM_001180427.1_ThermosaccDry | cds-NP_010404.1_ThermosaccDry | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:680585-682891:+ | gene-YDR119W_VR1 | rna-NM_001180427.1_VR1 | cds-NP_010404.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:664843-667149:+ | gene-YDR119W_ZTW1 | rna-NM_001180427.1_ZTW1 | cds-NP_010404.1_ZTW1 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:669270-671579:+ | gene-YDR119W_Sparadoxus | rna-NM_001180427.1_Sparadoxus | cds-NP_010404.1_Sparadoxus | 87.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |