Gene name: VBA3
Reference locus (S288C): YCL069W
Gene biotype: protein_coding
Description: Permease of basic amino acids in the vacuolar membrane; VBA3 has a paralog, VBA5, that arose from a segmental duplication
Top 10 interactors (score): VBA1 (0.961); YMR279C (0.895); GEX2 (0.83); AMF1 (0.816); GEX1 (0.806); ATR1 (0.791); AVT6 (0.775); AVT4 (0.771); AVT3 (0.769); YCR024C-B (0.76); YCL042W (0.76); VBA4 (0.741); AVT1 (0.729); YCL001W-A (0.695); YHC3 (0.647); CIS3 (0.646); VBA2 (0.634); YCR051W (0.584); LYP1 (0.578); OCA4 (0.569)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:10188-11564:+ | gene-YCL069W_AKU4011 | rna-NM_001178710.1_AKU4011 | cds-NP_009864.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000017.1:1132-2508:+ | gene-YCL069W_BG1 | rna-NM_001178710.1_BG1 | cds-NP_009864.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:10871-12247:+ | gene-YCL069W_CBS1585 | rna-NM_001178710.1_CBS1585 | cds-NP_009864.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:9731-11107:+ | gene-YCL069W_CBS436 | rna-NM_001178710.1_CBS436 | cds-NP_009864.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:9394-10770:+ | gene-YCL069W_CBS6413 | rna-NM_001178710.1_CBS6413 | cds-NP_009864.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:9404-10780:+ | gene-YCL069W_CENPK1137D | rna-NM_001178710.1_CENPK1137D | cds-NP_009864.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000295.1:1255-2631:- | gene-YCL069W_JAY291 | rna-NM_001178710.1_JAY291 | cds-NP_009864.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:11336-12712:+ | gene-YCL069W_NCYC1407 | rna-NM_001178710.1_NCYC1407 | cds-NP_009864.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:9557-10933:+ | gene-YCL069W_PE2H3 | rna-NM_001178710.1_PE2H3 | cds-NP_009864.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:665447-666823:- | gene-YCL069W_PE2H4 | rna-NM_001178710.1_PE2H4 | cds-NP_009864.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:9706-11082:+ | gene-YCL069W_S288C | rna-NM_001178710.1_S288C | cds-NP_009864.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000120.1:144-1520:- | gene-YCL069W_SA1 | rna-NM_001178710.1_SA1 | cds-NP_009864.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:9569-10945:+ | gene-YCL069W_ThermosaccDry | rna-NM_001178710.1_ThermosaccDry | cds-NP_009864.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:656446-657822:- | gene-YCL069W_VR1 | rna-NM_001178710.1_VR1 | cds-NP_009864.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:9439-10815:+ | gene-YCL069W_ZTW1 | rna-NM_001178710.1_ZTW1 | cds-NP_009864.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:681023-682399:- | gene-YCL069W_Sparadoxus | rna-NM_001178710.1_Sparadoxus | cds-NP_009864.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |