Gene name: VBA2
Reference locus (S288C): YBR293W
Gene biotype: protein_coding
Description: Vacuolar basic amino acid transporter 2; Permease of basic amino acids in the vacuolar membrane
Top 10 interactors (score): ATG22 (0.929); VBA4 (0.864); AMF1 (0.855); YJL163C (0.839); AVT4 (0.782); AVT3 (0.765); GEX2 (0.749); YMR155W (0.747); AVT6 (0.729); PUT2 (0.721); HOL1 (0.694); ARN1 (0.691); AVT1 (0.685); GEX1 (0.678); SSU1 (0.663); PTR2 (0.659); GAP1 (0.654); VBA3 (0.634); ENB1 (0.617); YCT1 (0.586)
Homologues (species, bitscore): hmit-1.1 (Caenorhabditis elegans, 53.5); AT5G65687 (Arabidopsis thaliana, 59.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:771338-772762:+ | gene-YBR293W_AKU4011 | rna-NM_001178641.3_AKU4011 | cds-NP_009852.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:142300-143724:+ | gene-YBR293W_BG1 | rna-NM_001178641.3_BG1 | cds-NP_009852.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:772411-773835:+ | gene-YBR293W_Bruggeman | rna-NM_001178641.3_Bruggeman | cds-NP_009852.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:776163-777587:+ | gene-YBR293W_CAT1 | rna-NM_001178641.3_CAT1 | cds-NP_009852.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:762905-764329:+ | gene-YBR293W_CBS1585 | rna-NM_001178641.3_CBS1585 | cds-NP_009852.3_CBS1585 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:769293-770717:+ | gene-YBR293W_CBS436 | rna-NM_001178641.3_CBS436 | cds-NP_009852.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:857454-858878:+ | gene-YBR293W_CBS6412 | rna-NM_001178641.3_CBS6412 | cds-NP_009852.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:768934-770358:+ | gene-YBR293W_CBS6413 | rna-NM_001178641.3_CBS6413 | cds-NP_009852.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:780905-782329:+ | gene-YBR293W_CENPK1137D | rna-NM_001178641.3_CENPK1137D | cds-NP_009852.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:894372-895796:+ | gene-YBR293W_EthanolRed | rna-NM_001178641.3_EthanolRed | cds-NP_009852.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:787719-789143:+ | gene-YBR293W_FaliES1 | rna-NM_001178641.3_FaliES1 | cds-NP_009852.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:15039-16463:- | gene-YBR293W_JAY291 | rna-NM_001178641.3_JAY291 | cds-NP_009852.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:774481-775905:+ | gene-YBR293W_MUCL30387 | rna-NM_001178641.3_MUCL30387 | cds-NP_009852.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:791812-793236:+ | gene-YBR293W_MUCL30388 | rna-NM_001178641.3_MUCL30388 | cds-NP_009852.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:761212-762636:+ | gene-YBR293W_MUCL39482 | rna-NM_001178641.3_MUCL39482 | cds-NP_009852.3_MUCL39482 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:771022-772446:+ | gene-YBR293W_MUCL42920 | rna-NM_001178641.3_MUCL42920 | cds-NP_009852.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:786803-788227:+ | gene-YBR293W_NCIM3186 | rna-NM_001178641.3_NCIM3186 | cds-NP_009852.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:763100-764524:+ | gene-YBR293W_NCYC1407 | rna-NM_001178641.3_NCYC1407 | cds-NP_009852.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:786191-787615:+ | gene-YBR293W_PE2H3 | rna-NM_001178641.3_PE2H3 | cds-NP_009852.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:783867-785291:+ | gene-YBR293W_PE2H4 | rna-NM_001178641.3_PE2H4 | cds-NP_009852.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:787006-788430:+ | gene-YBR293W_S288C | rna-NM_001178641.3_S288C | cds-NP_009852.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:142147-143571:+ | gene-YBR293W_SA1 | rna-NM_001178641.3_SA1 | cds-NP_009852.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:786711-788135:+ | gene-YBR293W_ThermosaccDry | rna-NM_001178641.3_ThermosaccDry | cds-NP_009852.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:766889-768313:+ | gene-YBR293W_VR1 | rna-NM_001178641.3_VR1 | cds-NP_009852.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:759526-760950:+ | gene-YBR293W_ZTW1 | rna-NM_001178641.3_ZTW1 | cds-NP_009852.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:803003-804427:+ | gene-YBR293W_Sparadoxus | rna-NM_001178641.3_Sparadoxus | cds-NP_009852.3_Sparadoxus | 90.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |