Gene name: VBA1
Reference locus (S288C): YMR088C
Gene biotype: protein_coding
Description: Vacuolar basic amino acid transporter 1; Permease of basic amino acids in the vacuolar membrane
Top 10 interactors (score): VBA3 (0.961); YMR279C (0.858); AVT1 (0.853); YJL163C (0.818); AVT6 (0.79); AVT4 (0.762); AVT3 (0.731); YMR155W (0.725); GEX2 (0.715); ATG22 (0.696); ERS1 (0.655); GAP1 (0.634); GEX1 (0.598); YHC3 (0.593); DAL1 (0.571); DCG1 (0.57); QDR2 (0.524); VBA2 (0.506); MCH4 (0.504); ENB1 (0.499)
Homologues (species, bitscore): MFSD9 (Homo sapiens, 50.4); Mfsd9 (Mus musculus, 52.8); PMT2 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:481351-483039:- | gene-YMR088C_AKU4011 | rna-NM_001182588.1_AKU4011 | cds-NP_013806.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:59975-61663:+ | gene-YMR088C_BG1 | rna-NM_001182588.1_BG1 | cds-NP_013806.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:423530-425218:- | gene-YMR088C_Bruggeman | rna-NM_001182588.1_Bruggeman | cds-NP_013806.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:423855-425543:- | gene-YMR088C_CAT1 | rna-NM_001182588.1_CAT1 | cds-NP_013806.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:414291-415979:- | gene-YMR088C_CBS1585 | rna-NM_001182588.1_CBS1585 | cds-NP_013806.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:419614-421302:- | gene-YMR088C_CBS436 | rna-NM_001182588.1_CBS436 | cds-NP_013806.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:527390-529078:- | gene-YMR088C_CBS6412 | rna-NM_001182588.1_CBS6412 | cds-NP_013806.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:413548-415236:- | gene-YMR088C_CBS6413 | rna-NM_001182588.1_CBS6413 | cds-NP_013806.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:437517-439205:- | gene-YMR088C_CENPK1137D | rna-NM_001182588.1_CENPK1137D | cds-NP_013806.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:414182-415870:- | gene-YMR088C_EthanolRed | rna-NM_001182588.1_EthanolRed | cds-NP_013806.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:417348-419036:- | gene-YMR088C_FaliES1 | rna-NM_001182588.1_FaliES1 | cds-NP_013806.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:18176-19864:+ | gene-YMR088C_JAY291 | rna-NM_001182588.1_JAY291 | cds-NP_013806.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:419790-421478:- | gene-YMR088C_MUCL30387 | rna-NM_001182588.1_MUCL30387 | cds-NP_013806.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:424693-426381:- | gene-YMR088C_MUCL30388 | rna-NM_001182588.1_MUCL30388 | cds-NP_013806.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:414603-416291:- | gene-YMR088C_MUCL39482 | rna-NM_001182588.1_MUCL39482 | cds-NP_013806.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:421268-422956:- | gene-YMR088C_MUCL42920 | rna-NM_001182588.1_MUCL42920 | cds-NP_013806.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:443368-445056:- | gene-YMR088C_NCIM3186 | rna-NM_001182588.1_NCIM3186 | cds-NP_013806.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:414495-416183:- | gene-YMR088C_NCYC1407 | rna-NM_001182588.1_NCYC1407 | cds-NP_013806.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:420215-421903:- | gene-YMR088C_PE2H3 | rna-NM_001182588.1_PE2H3 | cds-NP_013806.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:426310-427998:- | gene-YMR088C_PE2H4 | rna-NM_001182588.1_PE2H4 | cds-NP_013806.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:443414-445102:- | gene-YMR088C_S288C | rna-NM_001182588.1_S288C | cds-NP_013806.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:105066-106754:+ | gene-YMR088C_SA1 | rna-NM_001182588.1_SA1 | cds-NP_013806.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:415151-416839:- | gene-YMR088C_ThermosaccDry | rna-NM_001182588.1_ThermosaccDry | cds-NP_013806.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:426801-428489:- | gene-YMR088C_VR1 | rna-NM_001182588.1_VR1 | cds-NP_013806.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:391421-393109:- | gene-YMR088C_ZTW1 | rna-NM_001182588.1_ZTW1 | cds-NP_013806.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:427888-429576:- | gene-YMR088C_Sparadoxus | rna-NM_001182588.1_Sparadoxus | cds-NP_013806.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |