Gene name: VAS1
Reference locus (S288C): YGR094W
Gene biotype: protein_coding
Description: Valine--tRNA ligase, mitochondrial; Mitochondrial and cytoplasmic valyl-tRNA synthetase; human homolog VARS2 implicated in mitochondrial diseases, can partially complement yeast null mutant
Top 10 interactors (score): CDC60 (0.999); ILS1 (0.998); GLN4 (0.998); GUS1 (0.997); HTS1 (0.993); TEF4 (0.991); CAM1 (0.988); THS1 (0.988); GRS1 (0.987); ALA1 (0.982); FRS2 (0.968); MSF1 (0.96); ARC1 (0.956); KRS1 (0.956); DED81 (0.948); MES1 (0.933); TYS1 (0.922); YDR341C (0.922); MST1 (0.921); YNL247W (0.906)
Homologues (species, bitscore): VARS (Homo sapiens, 1027.7); Vars (Mus musculus, 1029.2); vars (Danio rerio, 1018.1); vars (Xenopus tropicalis, 944.1); Aats-val (Drosophila melanogaster, 1059.7); vars-2 (Caenorhabditis elegans, 976.1); TWN2 (Arabidopsis thaliana, 946.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:656366-659680:+ | gene-YGR094W_AKU4011 | rna-NM_001181223.1_AKU4011 | cds-NP_011608.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:92173-95487:+ | gene-YGR094W_BG1 | rna-NM_001181223.1_BG1 | cds-NP_011608.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:658556-661870:+ | gene-YGR094W_Bruggeman | rna-NM_001181223.1_Bruggeman | cds-NP_011608.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:656746-660060:+ | gene-YGR094W_CAT1 | rna-NM_001181223.1_CAT1 | cds-NP_011608.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:657330-660644:+ | gene-YGR094W_CBS1585 | rna-NM_001181223.1_CBS1585 | cds-NP_011608.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:658990-662304:+ | gene-YGR094W_CBS436 | rna-NM_001181223.1_CBS436 | cds-NP_011608.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:649023-652337:+ | gene-YGR094W_CBS6412 | rna-NM_001181223.1_CBS6412 | cds-NP_011608.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:653965-657279:+ | gene-YGR094W_CBS6413 | rna-NM_001181223.1_CBS6413 | cds-NP_011608.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:671863-675177:+ | gene-YGR094W_CENPK1137D | rna-NM_001181223.1_CENPK1137D | cds-NP_011608.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:643917-647231:+ | gene-YGR094W_EthanolRed | rna-NM_001181223.1_EthanolRed | cds-NP_011608.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:647762-651076:+ | gene-YGR094W_FaliES1 | rna-NM_001181223.1_FaliES1 | cds-NP_011608.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000396.1:25478-28792:- | gene-YGR094W_JAY291 | rna-NM_001181223.1_JAY291 | cds-NP_011608.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:655544-658858:+ | gene-YGR094W_MUCL30387 | rna-NM_001181223.1_MUCL30387 | cds-NP_011608.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:658356-661670:+ | gene-YGR094W_MUCL30388 | rna-NM_001181223.1_MUCL30388 | cds-NP_011608.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:653058-656372:+ | gene-YGR094W_MUCL39482 | rna-NM_001181223.1_MUCL39482 | cds-NP_011608.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:663368-666682:+ | gene-YGR094W_MUCL42920 | rna-NM_001181223.1_MUCL42920 | cds-NP_011608.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:672186-675500:+ | gene-YGR094W_NCIM3186 | rna-NM_001181223.1_NCIM3186 | cds-NP_011608.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:647747-651061:+ | gene-YGR094W_NCYC1407 | rna-NM_001181223.1_NCYC1407 | cds-NP_011608.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:650436-653750:+ | gene-YGR094W_PE2H3 | rna-NM_001181223.1_PE2H3 | cds-NP_011608.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:655556-658870:+ | gene-YGR094W_PE2H4 | rna-NM_001181223.1_PE2H4 | cds-NP_011608.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:672186-675500:+ | gene-YGR094W_S288C | rna-NM_001181223.1_S288C | cds-NP_011608.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:98760-102074:+ | gene-YGR094W_SA1 | rna-NM_001181223.1_SA1 | cds-NP_011608.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:668132-671446:+ | gene-YGR094W_ThermosaccDry | rna-NM_001181223.1_ThermosaccDry | cds-NP_011608.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:764626-767940:+ | gene-YGR094W_VR1 | rna-NM_001181223.1_VR1 | cds-NP_011608.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:122382-125696:+ | gene-YGR094W_ZTW1 | rna-NM_001181223.1_ZTW1 | cds-NP_011608.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:658184-661498:+ | gene-YGR094W_Sparadoxus | rna-NM_001181223.1_Sparadoxus | cds-NP_011608.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |