Gene name: VAR1
Reference locus (S288C): Q0140
Gene biotype: protein_coding
Description: Mitochondrial ribosomal protein of the small subunit; mitochondrially-encoded; polymorphic in different strains due to variation in number of AAT (asparagine) codons; translated near the mitochondrial inner membrane; may have a role in loss of mitochondrial DNA under stress conditions
Top 10 interactors (score): MRPS5 (0.993); MRPS35 (0.989); NAM9 (0.988); RSM7 (0.985); MRP4 (0.985); RSM24 (0.984); MRP10 (0.98); PET123 (0.98); MRP17 (0.98); MRPS9 (0.98); MRPS18 (0.98); MRP21 (0.98); RSM23 (0.98); MRP51 (0.98); RSM26 (0.98); MRP1 (0.98); MRPS17 (0.98); RSM28 (0.98); MRP13 (0.979); MRPS8 (0.979)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000055.1:38263-38607:+ | gene-Q0140_AKU4011 | rna-Q0140_AKU4011 | cds-NP_009320.1_AKU4011 | 28.8 | 28.8 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000033.1:46823-48357:+ | gene-Q0140_Bruggeman | rna-Q0140_Bruggeman | cds-NP_009320.1_Bruggeman | 57.6 | 99.4 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000067.1:31490-32695:- | gene-Q0140_CBS1585 | rna-Q0140_CBS1585 | cds-NP_009320.1_CBS1585 | 62.7 | 84.5 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | MBVR01000053.1:44786-45939:+ | gene-Q0140_CBS436 | rna-Q0140_CBS436 | cds-NP_009320.1_CBS436 | 69.1 | 95.9 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:4409-4549:- | gene-Q0140_CBS6412 | rna-Q0140_CBS6412 | cds-NP_009320.1_CBS6412 | 11.1 | 11.6 | Mismatch | 1 | 1 | 0 | Unknown | False | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000101.1:70541-71704:+ | gene-Q0140_CBS6413 | rna-Q0140_CBS6413 | cds-NP_009320.1_CBS6413 | 94.3 | 95.9 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000016.1:39617-40823:+ | gene-Q0140_FaliES1 | rna-Q0140_FaliES1 | cds-NP_009320.1_FaliES1 | 71.8 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000050.1:35-1294:- | gene-Q0140_JAY291 | rna-Q0140_JAY291 | cds-NP_009320.1_JAY291 | 94.9 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000168.1:43669-44588:+ | gene-Q0140_MUCL30387 | rna-Q0140_MUCL30387 | cds-NP_009320.1_MUCL30387 | 57.2 | 71.6 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000208.1:46008-47203:+ | gene-Q0140_MUCL30388 | rna-Q0140_MUCL30388 | cds-NP_009320.1_MUCL30388 | 67.5 | 99.9 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000090.1:29671-30023:+ | gene-Q0140_MUCL39482 | rna-Q0140_MUCL39482 | cds-NP_009320.1_MUCL39482 | 29.4 | 29.4 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000309.1:45538-46794:+ | gene-Q0140_MUCL42920 | rna-Q0140_MUCL42920 | cds-NP_009320.1_MUCL42920 | 95.1 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000021.1:43815-44966:+ | gene-Q0140_NCYC1407 | rna-Q0140_NCYC1407 | cds-NP_009320.1_NCYC1407 | 67.8 | 95.9 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994156.1:42323-43582:+ | gene-Q0140_PE2H3 | rna-Q0140_PE2H3 | cds-NP_009320.1_PE2H3 | 94.9 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999888.1:42323-43582:+ | gene-Q0140_PE2H4 | rna-Q0140_PE2H4 | cds-NP_009320.1_PE2H4 | 94.9 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001224.1:48901-50097:+ | gene-Q0140_S288C | rna-Q0140_S288C | cds-NP_009320.1_S288C | 100.0 | 100.0 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000049.1:63874-65112:- | gene-Q0140_SA1 | rna-Q0140_SA1 | cds-NP_009320.1_SA1 | 95.5 | 99.4 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000010.1:37428-37770:+ | gene-Q0140_ThermosaccDry | rna-Q0140_ThermosaccDry | cds-NP_009320.1_ThermosaccDry | 28.6 | 28.6 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000293.1:44246-45491:+ | gene-Q0140_VR1 | rna-Q0140_VR1 | cds-NP_009320.1_VR1 | 68.2 | 99.7 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_018044.1:51455-52570:+ | gene-Q0140_Sparadoxus | rna-Q0140_Sparadoxus | cds-NP_009320.1_Sparadoxus | 91.5 | 92.9 | Unannotated | 1 | 1 | 0 | Unknown | False | False | False | False |