Gene name: VAM7
Reference locus (S288C): YGL212W
Gene biotype: protein_coding
Description: Regulator of vacuolar morphogenesis; Vacuolar SNARE protein; functions with Vam3p in vacuolar protein trafficking; has an N-terminal PX domain (phosphoinositide-binding module) that binds PtdIns-3-P and mediates membrane binding; SNAP-25 homolog; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): YKT6 (0.999); VAM3 (0.999); NYV1 (0.999); PEP3 (0.999); VAM6 (0.999); VPS33 (0.999); SEC17 (0.999); VPS41 (0.999); VTI1 (0.999); VPS16 (0.999); PEP5 (0.999); YPT7 (0.987); SEC22 (0.986); GOS1 (0.981); BOS1 (0.98); SED5 (0.976); TLG2 (0.976); SSO1 (0.975); PEP12 (0.974); BET1 (0.973)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:92777-93727:+ | gene-YGL212W_AKU4011 | rna-NM_001181077.1_AKU4011 | cds-NP_011303.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:85839-86789:+ | gene-YGL212W_BG1 | rna-NM_001181077.1_BG1 | cds-NP_011303.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:93285-94235:+ | gene-YGL212W_Bruggeman | rna-NM_001181077.1_Bruggeman | cds-NP_011303.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:91951-92901:+ | gene-YGL212W_CAT1 | rna-NM_001181077.1_CAT1 | cds-NP_011303.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:97082-98032:+ | gene-YGL212W_CBS1585 | rna-NM_001181077.1_CBS1585 | cds-NP_011303.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:92645-93596:+ | gene-YGL212W_CBS436 | rna-NM_001181077.1_CBS436 | cds-NP_011303.1_CBS436 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:84213-85163:+ | gene-YGL212W_CBS6412 | rna-NM_001181077.1_CBS6412 | cds-NP_011303.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:90917-91867:+ | gene-YGL212W_CBS6413 | rna-NM_001181077.1_CBS6413 | cds-NP_011303.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:91463-92413:+ | gene-YGL212W_CENPK1137D | rna-NM_001181077.1_CENPK1137D | cds-NP_011303.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:83578-84528:+ | gene-YGL212W_EthanolRed | rna-NM_001181077.1_EthanolRed | cds-NP_011303.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:84421-85371:+ | gene-YGL212W_FaliES1 | rna-NM_001181077.1_FaliES1 | cds-NP_011303.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:10827-11777:+ | gene-YGL212W_JAY291 | rna-NM_001181077.1_JAY291 | cds-NP_011303.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:93202-94152:+ | gene-YGL212W_MUCL30387 | rna-NM_001181077.1_MUCL30387 | cds-NP_011303.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:95380-96330:+ | gene-YGL212W_MUCL30388 | rna-NM_001181077.1_MUCL30388 | cds-NP_011303.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:93595-94545:+ | gene-YGL212W_MUCL39482 | rna-NM_001181077.1_MUCL39482 | cds-NP_011303.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:96698-97648:+ | gene-YGL212W_MUCL42920 | rna-NM_001181077.1_MUCL42920 | cds-NP_011303.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:91432-92382:+ | gene-YGL212W_NCIM3186 | rna-NM_001181077.1_NCIM3186 | cds-NP_011303.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:85317-86267:+ | gene-YGL212W_NCYC1407 | rna-NM_001181077.1_NCYC1407 | cds-NP_011303.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:88144-89094:+ | gene-YGL212W_PE2H3 | rna-NM_001181077.1_PE2H3 | cds-NP_011303.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:87692-88642:+ | gene-YGL212W_PE2H4 | rna-NM_001181077.1_PE2H4 | cds-NP_011303.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:91432-92382:+ | gene-YGL212W_S288C | rna-NM_001181077.1_S288C | cds-NP_011303.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:282901-283851:- | gene-YGL212W_SA1 | rna-NM_001181077.1_SA1 | cds-NP_011303.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:84682-85632:+ | gene-YGL212W_ThermosaccDry | rna-NM_001181077.1_ThermosaccDry | cds-NP_011303.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:92559-93509:+ | gene-YGL212W_VR1 | rna-NM_001181077.1_VR1 | cds-NP_011303.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:83722-84672:+ | gene-YGL212W_ZTW1 | rna-NM_001181077.1_ZTW1 | cds-NP_011303.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:90852-91803:+ | gene-YGL212W_Sparadoxus | rna-NM_001181077.1_Sparadoxus | cds-NP_011303.1_Sparadoxus | 88.0 | 99.8 | Verified | 1 | 1 | 0 | False | False | True | False | False |