Gene name: VAM3
Reference locus (S288C): YOR106W
Gene biotype: protein_coding
Description: Snap receptor vam3; Syntaxin-like vacuolar t-SNARE; functions with Vam7p in vacuolar protein trafficking; mediates docking/fusion of late transport intermediates with the vacuole; has an acidic di-leucine sorting signal and C-terminal transmembrane region
Top 10 interactors (score): VPS33 (0.999); SEC17 (0.999); VAM7 (0.999); VAM6 (0.999); VTI1 (0.999); VPS41 (0.999); PEP5 (0.999); VPS16 (0.999); YKT6 (0.999); NYV1 (0.999); PEP3 (0.999); SEC18 (0.996); SEC22 (0.995); SEC9 (0.993); SSO1 (0.99); VPS45 (0.99); GOS1 (0.989); BET1 (0.987); SPO20 (0.985); SNC1 (0.981)
Homologues (species, bitscore): STX7 (Homo sapiens, 64.7); Stx7 (Mus musculus, 66.6); stx7l (Danio rerio, 53.9); stx7 (Xenopus tropicalis, 63.9); Syx16 (Drosophila melanogaster, 56.6); syx-5 (Caenorhabditis elegans, 56.6); SYP21 (Arabidopsis thaliana, 71.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:503197-504048:+ | gene-YOR106W_AKU4011 | rna-NM_001183525.1_AKU4011 | cds-NP_014749.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:75010-75861:- | gene-YOR106W_BG1 | rna-NM_001183525.1_BG1 | cds-NP_014749.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:506779-507630:+ | gene-YOR106W_Bruggeman | rna-NM_001183525.1_Bruggeman | cds-NP_014749.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:506753-507604:+ | gene-YOR106W_CAT1 | rna-NM_001183525.1_CAT1 | cds-NP_014749.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:498489-499340:+ | gene-YOR106W_CBS1585 | rna-NM_001183525.1_CBS1585 | cds-NP_014749.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:503514-504365:+ | gene-YOR106W_CBS436 | rna-NM_001183525.1_CBS436 | cds-NP_014749.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:497230-498081:+ | gene-YOR106W_CBS6412 | rna-NM_001183525.1_CBS6412 | cds-NP_014749.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:504525-505376:+ | gene-YOR106W_CBS6413 | rna-NM_001183525.1_CBS6413 | cds-NP_014749.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:519183-520034:+ | gene-YOR106W_CENPK1137D | rna-NM_001183525.1_CENPK1137D | cds-NP_014749.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:499729-500580:+ | gene-YOR106W_EthanolRed | rna-NM_001183525.1_EthanolRed | cds-NP_014749.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:503238-504089:+ | gene-YOR106W_FaliES1 | rna-NM_001183525.1_FaliES1 | cds-NP_014749.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:55154-56005:- | gene-YOR106W_JAY291 | rna-NM_001183525.1_JAY291 | cds-NP_014749.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:511317-512168:+ | gene-YOR106W_MUCL30387 | rna-NM_001183525.1_MUCL30387 | cds-NP_014749.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:516503-517354:+ | gene-YOR106W_MUCL30388 | rna-NM_001183525.1_MUCL30388 | cds-NP_014749.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:506134-506985:+ | gene-YOR106W_MUCL39482 | rna-NM_001183525.1_MUCL39482 | cds-NP_014749.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:522226-523077:+ | gene-YOR106W_MUCL42920 | rna-NM_001183525.1_MUCL42920 | cds-NP_014749.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:519010-519861:+ | gene-YOR106W_NCIM3186 | rna-NM_001183525.1_NCIM3186 | cds-NP_014749.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:512586-513437:+ | gene-YOR106W_NCYC1407 | rna-NM_001183525.1_NCYC1407 | cds-NP_014749.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:511586-512437:+ | gene-YOR106W_PE2H3 | rna-NM_001183525.1_PE2H3 | cds-NP_014749.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:521962-522813:+ | gene-YOR106W_PE2H4 | rna-NM_001183525.1_PE2H4 | cds-NP_014749.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:519121-519972:+ | gene-YOR106W_S288C | rna-NM_001183525.1_S288C | cds-NP_014749.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000098.1:2841-3692:- | gene-YOR106W_SA1 | rna-NM_001183525.1_SA1 | cds-NP_014749.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:502392-503243:+ | gene-YOR106W_ThermosaccDry | rna-NM_001183525.1_ThermosaccDry | cds-NP_014749.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:504513-505364:+ | gene-YOR106W_VR1 | rna-NM_001183525.1_VR1 | cds-NP_014749.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:236380-237231:+ | gene-YOR106W_ZTW1 | rna-NM_001183525.1_ZTW1 | cds-NP_014749.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:508364-509215:+ | gene-YOR106W_Sparadoxus | rna-NM_001183525.1_Sparadoxus | cds-NP_014749.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |