Gene name: VAC8
Reference locus (S288C): YEL013W
Gene biotype: protein_coding
Description: Vacuolar protein 8; Phosphorylated and palmitoylated vacuolar membrane protein; interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions
Top 10 interactors (score): NVJ1 (0.999); ATG13 (0.998); VAC17 (0.998); PFA3 (0.99); MYO2 (0.987); VAB2 (0.974); MEH1 (0.939); ATG11 (0.934); LAM6 (0.921); SWF1 (0.908); ATG1 (0.892); PFA4 (0.891); ENV7 (0.875); AKR1 (0.875); SWH1 (0.857); YKT6 (0.825); VAM3 (0.821); AKR2 (0.813); PHO8 (0.791); YPT32 (0.786)
Homologues (species, bitscore): ARMC3 (Homo sapiens, 90.9); Armc3 (Mus musculus, 82.8); ankar (Danio rerio, 74.3); jup (Xenopus tropicalis, 77.0); gudu (Drosophila melanogaster, 70.1); ima-3 (Caenorhabditis elegans, 57.4); ARIA (Arabidopsis thaliana, 99.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:122851-124587:+ | gene-YEL013W_AKU4011 | rna-NM_001178828.3_AKU4011 | cds-NP_010903.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:301376-303112:- | gene-YEL013W_BG1 | rna-NM_001178828.3_BG1 | cds-NP_010903.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:129379-131115:+ | gene-YEL013W_Bruggeman | rna-NM_001178828.3_Bruggeman | cds-NP_010903.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:125031-126767:+ | gene-YEL013W_CAT1 | rna-NM_001178828.3_CAT1 | cds-NP_010903.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:122792-124528:+ | gene-YEL013W_CBS1585 | rna-NM_001178828.3_CBS1585 | cds-NP_010903.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:124430-126166:+ | gene-YEL013W_CBS436 | rna-NM_001178828.3_CBS436 | cds-NP_010903.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:123071-124807:+ | gene-YEL013W_CBS6412 | rna-NM_001178828.3_CBS6412 | cds-NP_010903.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:127679-129415:+ | gene-YEL013W_CBS6413 | rna-NM_001178828.3_CBS6413 | cds-NP_010903.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:126681-128417:+ | gene-YEL013W_CENPK1137D | rna-NM_001178828.3_CENPK1137D | cds-NP_010903.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:123171-124907:+ | gene-YEL013W_EthanolRed | rna-NM_001178828.3_EthanolRed | cds-NP_010903.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:123430-125166:+ | gene-YEL013W_FaliES1 | rna-NM_001178828.3_FaliES1 | cds-NP_010903.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:42322-44058:+ | gene-YEL013W_JAY291 | rna-NM_001178828.3_JAY291 | cds-NP_010903.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:127099-128835:+ | gene-YEL013W_MUCL30387 | rna-NM_001178828.3_MUCL30387 | cds-NP_010903.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:123068-124804:+ | gene-YEL013W_MUCL30388 | rna-NM_001178828.3_MUCL30388 | cds-NP_010903.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:122156-123892:+ | gene-YEL013W_MUCL39482 | rna-NM_001178828.3_MUCL39482 | cds-NP_010903.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:126786-128522:+ | gene-YEL013W_MUCL42920 | rna-NM_001178828.3_MUCL42920 | cds-NP_010903.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:128824-130560:+ | gene-YEL013W_NCIM3186 | rna-NM_001178828.3_NCIM3186 | cds-NP_010903.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:127261-128997:+ | gene-YEL013W_NCYC1407 | rna-NM_001178828.3_NCYC1407 | cds-NP_010903.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:131289-133025:+ | gene-YEL013W_PE2H3 | rna-NM_001178828.3_PE2H3 | cds-NP_010903.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:127204-128940:+ | gene-YEL013W_PE2H4 | rna-NM_001178828.3_PE2H4 | cds-NP_010903.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:128825-130561:+ | gene-YEL013W_S288C | rna-NM_001178828.3_S288C | cds-NP_010903.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:112665-114401:- | gene-YEL013W_SA1 | rna-NM_001178828.3_SA1 | cds-NP_010903.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:123835-125571:+ | gene-YEL013W_ThermosaccDry | rna-NM_001178828.3_ThermosaccDry | cds-NP_010903.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:123380-125116:+ | gene-YEL013W_VR1 | rna-NM_001178828.3_VR1 | cds-NP_010903.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:122197-123933:+ | gene-YEL013W_ZTW1 | rna-NM_001178828.3_ZTW1 | cds-NP_010903.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:125618-127351:+ | gene-YEL013W_Sparadoxus | rna-NM_001178828.3_Sparadoxus | cds-NP_010903.3_Sparadoxus | 92.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |