Gene name: VAB2
Reference locus (S288C): YEL005C
Gene biotype: protein_coding
Description: Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Vps21p-GFP; has potential role in vacuolar function, as suggested by its ability to bind Vac8p; likely member of; Vab2p-GFP-fusion localizes to cytoplasm in punctate pattern
Top 10 interactors (score): CNL1 (0.997); KXD1 (0.997); SNN1 (0.996); BLI1 (0.995); BLS1 (0.988); VAC8 (0.974); MSB3 (0.776); YFR035C (0.76); VFA1 (0.692); VPS21 (0.656); EMP70 (0.613); YEL043W (0.611); RCR1 (0.574); CET1 (0.561); PFA3 (0.526); YPT7 (0.499); RRT2 (0.499); GYP5 (0.489); TAO3 (0.483); ATG13 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:139588-140436:- | gene-YEL005C_AKU4011 | rna-NM_001178820.3_AKU4011 | cds-NP_010911.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:285234-286082:+ | gene-YEL005C_BG1 | rna-NM_001178820.3_BG1 | cds-NP_010911.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:146120-146968:- | gene-YEL005C_Bruggeman | rna-NM_001178820.3_Bruggeman | cds-NP_010911.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:142517-143365:- | gene-YEL005C_CAT1 | rna-NM_001178820.3_CAT1 | cds-NP_010911.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:139897-140745:- | gene-YEL005C_CBS1585 | rna-NM_001178820.3_CBS1585 | cds-NP_010911.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:141176-142024:- | gene-YEL005C_CBS436 | rna-NM_001178820.3_CBS436 | cds-NP_010911.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:139791-140639:- | gene-YEL005C_CBS6412 | rna-NM_001178820.3_CBS6412 | cds-NP_010911.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:144439-145287:- | gene-YEL005C_CBS6413 | rna-NM_001178820.3_CBS6413 | cds-NP_010911.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:143734-144582:- | gene-YEL005C_CENPK1137D | rna-NM_001178820.3_CENPK1137D | cds-NP_010911.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:140255-141102:- | gene-YEL005C_EthanolRed | rna-NM_001178820.3_EthanolRed | cds-NP_010911.3_EthanolRed | 99.6 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:140513-141361:- | gene-YEL005C_FaliES1 | rna-NM_001178820.3_FaliES1 | cds-NP_010911.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:7491-8339:- | gene-YEL005C_JAY291 | rna-NM_001178820.3_JAY291 | cds-NP_010911.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:143822-144670:- | gene-YEL005C_MUCL30387 | rna-NM_001178820.3_MUCL30387 | cds-NP_010911.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:140344-141192:- | gene-YEL005C_MUCL30388 | rna-NM_001178820.3_MUCL30388 | cds-NP_010911.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:138933-139781:- | gene-YEL005C_MUCL39482 | rna-NM_001178820.3_MUCL39482 | cds-NP_010911.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:143529-144377:- | gene-YEL005C_MUCL42920 | rna-NM_001178820.3_MUCL42920 | cds-NP_010911.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:145906-146754:- | gene-YEL005C_NCIM3186 | rna-NM_001178820.3_NCIM3186 | cds-NP_010911.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:144009-144857:- | gene-YEL005C_NCYC1407 | rna-NM_001178820.3_NCYC1407 | cds-NP_010911.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:148319-149167:- | gene-YEL005C_PE2H3 | rna-NM_001178820.3_PE2H3 | cds-NP_010911.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:144234-145082:- | gene-YEL005C_PE2H4 | rna-NM_001178820.3_PE2H4 | cds-NP_010911.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:145907-146755:- | gene-YEL005C_S288C | rna-NM_001178820.3_S288C | cds-NP_010911.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:96836-97684:+ | gene-YEL005C_SA1 | rna-NM_001178820.3_SA1 | cds-NP_010911.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:140919-141767:- | gene-YEL005C_ThermosaccDry | rna-NM_001178820.3_ThermosaccDry | cds-NP_010911.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:140410-141258:- | gene-YEL005C_VR1 | rna-NM_001178820.3_VR1 | cds-NP_010911.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:138946-139794:- | gene-YEL005C_ZTW1 | rna-NM_001178820.3_ZTW1 | cds-NP_010911.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:143633-144466:- | gene-YEL005C_Sparadoxus | rna-NM_001178820.3_Sparadoxus | cds-NP_010911.3_Sparadoxus | 85.8 | 98.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |