Gene name: UTP9
Reference locus (S288C): YHR196W
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 9; Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Top 10 interactors (score): BUD21 (0.999); NAN1 (0.999); RCL1 (0.999); UTP15 (0.999); EMG1 (0.999); NOP58 (0.999); PWP2 (0.999); BFR2 (0.999); MPP10 (0.999); UTP8 (0.999); UTP10 (0.999); UTP4 (0.999); NOP14 (0.999); UTP6 (0.999); UTP5 (0.999); UTP7 (0.999); UTP18 (0.999); SOF1 (0.999); DIP2 (0.999); RRP9 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:479011-480738:+ | gene-YHR196W_AKU4011 | rna-NM_001179327.1_AKU4011 | cds-NP_012066.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:37011-38738:- | gene-YHR196W_BG1 | rna-NM_001179327.1_BG1 | cds-NP_012066.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:486252-487979:+ | gene-YHR196W_Bruggeman | rna-NM_001179327.1_Bruggeman | cds-NP_012066.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:482535-484262:+ | gene-YHR196W_CAT1 | rna-NM_001179327.1_CAT1 | cds-NP_012066.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:478463-480190:+ | gene-YHR196W_CBS1585 | rna-NM_001179327.1_CBS1585 | cds-NP_012066.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:476402-478129:+ | gene-YHR196W_CBS436 | rna-NM_001179327.1_CBS436 | cds-NP_012066.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:478562-480289:+ | gene-YHR196W_CBS6412 | rna-NM_001179327.1_CBS6412 | cds-NP_012066.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:479853-481580:+ | gene-YHR196W_CBS6413 | rna-NM_001179327.1_CBS6413 | cds-NP_012066.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:485117-486844:+ | gene-YHR196W_CENPK1137D | rna-NM_001179327.1_CENPK1137D | cds-NP_012066.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:537549-539276:+ | gene-YHR196W_EthanolRed | rna-NM_001179327.1_EthanolRed | cds-NP_012066.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:479993-481720:+ | gene-YHR196W_FaliES1 | rna-NM_001179327.1_FaliES1 | cds-NP_012066.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000147.1:25153-26880:+ | gene-YHR196W_JAY291 | rna-NM_001179327.1_JAY291 | cds-NP_012066.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:487578-489305:+ | gene-YHR196W_MUCL30387 | rna-NM_001179327.1_MUCL30387 | cds-NP_012066.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:487001-488728:+ | gene-YHR196W_MUCL30388 | rna-NM_001179327.1_MUCL30388 | cds-NP_012066.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:478374-480101:+ | gene-YHR196W_MUCL39482 | rna-NM_001179327.1_MUCL39482 | cds-NP_012066.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:486318-488045:+ | gene-YHR196W_MUCL42920 | rna-NM_001179327.1_MUCL42920 | cds-NP_012066.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:491813-493540:+ | gene-YHR196W_NCIM3186 | rna-NM_001179327.1_NCIM3186 | cds-NP_012066.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:480837-482564:+ | gene-YHR196W_NCYC1407 | rna-NM_001179327.1_NCYC1407 | cds-NP_012066.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:479992-481719:+ | gene-YHR196W_PE2H3 | rna-NM_001179327.1_PE2H3 | cds-NP_012066.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:487419-489146:+ | gene-YHR196W_PE2H4 | rna-NM_001179327.1_PE2H4 | cds-NP_012066.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:491931-493658:+ | gene-YHR196W_S288C | rna-NM_001179327.1_S288C | cds-NP_012066.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000079.1:40078-41805:+ | gene-YHR196W_SA1 | rna-NM_001179327.1_SA1 | cds-NP_012066.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:481076-482803:+ | gene-YHR196W_ThermosaccDry | rna-NM_001179327.1_ThermosaccDry | cds-NP_012066.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:490294-492021:+ | gene-YHR196W_VR1 | rna-NM_001179327.1_VR1 | cds-NP_012066.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:471310-473040:+ | gene-YHR196W_ZTW1 | rna-NM_001179327.1_ZTW1 | cds-NP_012066.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:478016-479743:+ | gene-YHR196W_Sparadoxus | rna-NM_001179327.1_Sparadoxus | cds-NP_012066.1_Sparadoxus | 89.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |