UTP8 (YGR128C)


Gene profile

Gene name: UTP8
Reference locus (S288C): YGR128C
Gene biotype: protein_coding

Description: U3 small nucleolar RNA-associated protein 8; Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA

Top 10 interactors (score): UTP13 (0.999); MPP10 (0.999); UTP15 (0.999); NOP58 (0.999); BUD21 (0.999); NAN1 (0.999); ECM16 (0.999); UTP21 (0.999); NOC4 (0.999); BMS1 (0.999); UTP9 (0.999); PWP2 (0.999); RRP5 (0.999); ENP2 (0.999); UTP10 (0.999); UTP5 (0.999); UTP7 (0.999); UTP4 (0.999); UTP6 (0.999); NOP14 (0.999)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005301.1:726932-729073:- gene-YGR128C_AKU4011 rna-NM_001181257.3_AKU4011 cds-NP_011644.3_AKU4011 99.2 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000021.1:5700-7841:- gene-YGR128C_BG1 rna-NM_001181257.3_BG1 cds-NP_011644.3_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005509.1:729729-731870:- gene-YGR128C_Bruggeman rna-NM_001181257.3_Bruggeman cds-NP_011644.3_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005525.1:728382-730523:- gene-YGR128C_CAT1 rna-NM_001181257.3_CAT1 cds-NP_011644.3_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005365.1:727915-730056:- gene-YGR128C_CBS1585 rna-NM_001181257.3_CBS1585 cds-NP_011644.3_CBS1585 99.4 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005349.1:731300-733441:- gene-YGR128C_CBS436 rna-NM_001181257.3_CBS436 cds-NP_011644.3_CBS436 99.7 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005333.1:719591-721732:- gene-YGR128C_CBS6412 rna-NM_001181257.3_CBS6412 cds-NP_011644.3_CBS6412 99.4 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005317.1:724524-726665:- gene-YGR128C_CBS6413 rna-NM_001181257.3_CBS6413 cds-NP_011644.3_CBS6413 99.2 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001528.1:747662-749803:- gene-YGR128C_CENPK1137D rna-NM_001181257.3_CENPK1137D cds-NP_011644.3_CENPK1137D 99.9 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005477.1:713956-716097:- gene-YGR128C_EthanolRed rna-NM_001181257.3_EthanolRed cds-NP_011644.3_EthanolRed 99.3 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005541.1:717817-719958:- gene-YGR128C_FaliES1 rna-NM_001181257.3_FaliES1 cds-NP_011644.3_FaliES1 99.3 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000305.1:13891-16032:+ gene-YGR128C_JAY291 rna-NM_001181257.3_JAY291 cds-NP_011644.3_JAY291 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005422.1:836869-839010:- gene-YGR128C_MUCL30387 rna-NM_001181257.3_MUCL30387 cds-NP_011644.3_MUCL30387 99.2 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005445.1:729744-731885:- gene-YGR128C_MUCL30388 rna-NM_001181257.3_MUCL30388 cds-NP_011644.3_MUCL30388 99.3 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005285.1:723641-725782:- gene-YGR128C_MUCL39482 rna-NM_001181257.3_MUCL39482 cds-NP_011644.3_MUCL39482 99.4 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005429.1:733740-735881:- gene-YGR128C_MUCL42920 rna-NM_001181257.3_MUCL42920 cds-NP_011644.3_MUCL42920 99.2 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:747950-750091:- gene-YGR128C_NCIM3186 rna-NM_001181257.3_NCIM3186 cds-NP_011644.3_NCIM3186 98.9 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005269.1:718342-720483:- gene-YGR128C_NCYC1407 rna-NM_001181257.3_NCYC1407 cds-NP_011644.3_NCYC1407 99.2 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:738191-740332:- gene-YGR128C_PE2H3 rna-NM_001181257.3_PE2H3 cds-NP_011644.3_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999878.1:743301-745442:- gene-YGR128C_PE2H4 rna-NM_001181257.3_PE2H4 cds-NP_011644.3_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:747950-750091:- gene-YGR128C_S288C rna-NM_001181257.3_S288C cds-NP_011644.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000015.1:169091-171232:- gene-YGR128C_SA1 rna-NM_001181257.3_SA1 cds-NP_011644.3_SA1 99.0 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005493.1:738440-740581:- gene-YGR128C_ThermosaccDry rna-NM_001181257.3_ThermosaccDry cds-NP_011644.3_ThermosaccDry 99.3 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005461.1:841946-844087:- gene-YGR128C_VR1 rna-NM_001181257.3_VR1 cds-NP_011644.3_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000016.1:40586-42727:- gene-YGR128C_ZTW1 rna-NM_001181257.3_ZTW1 cds-NP_011644.3_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047493.1:728203-730344:- gene-YGR128C_Sparadoxus rna-NM_001181257.3_Sparadoxus cds-NP_011644.3_Sparadoxus 88.1 100.0 Verified 1 1 1 False True False False False

Additional files