Gene name: UTP8
Reference locus (S288C): YGR128C
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 8; Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Top 10 interactors (score): UTP13 (0.999); MPP10 (0.999); UTP15 (0.999); NOP58 (0.999); BUD21 (0.999); NAN1 (0.999); ECM16 (0.999); UTP21 (0.999); NOC4 (0.999); BMS1 (0.999); UTP9 (0.999); PWP2 (0.999); RRP5 (0.999); ENP2 (0.999); UTP10 (0.999); UTP5 (0.999); UTP7 (0.999); UTP4 (0.999); UTP6 (0.999); NOP14 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:726932-729073:- | gene-YGR128C_AKU4011 | rna-NM_001181257.3_AKU4011 | cds-NP_011644.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:5700-7841:- | gene-YGR128C_BG1 | rna-NM_001181257.3_BG1 | cds-NP_011644.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:729729-731870:- | gene-YGR128C_Bruggeman | rna-NM_001181257.3_Bruggeman | cds-NP_011644.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:728382-730523:- | gene-YGR128C_CAT1 | rna-NM_001181257.3_CAT1 | cds-NP_011644.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:727915-730056:- | gene-YGR128C_CBS1585 | rna-NM_001181257.3_CBS1585 | cds-NP_011644.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:731300-733441:- | gene-YGR128C_CBS436 | rna-NM_001181257.3_CBS436 | cds-NP_011644.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:719591-721732:- | gene-YGR128C_CBS6412 | rna-NM_001181257.3_CBS6412 | cds-NP_011644.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:724524-726665:- | gene-YGR128C_CBS6413 | rna-NM_001181257.3_CBS6413 | cds-NP_011644.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:747662-749803:- | gene-YGR128C_CENPK1137D | rna-NM_001181257.3_CENPK1137D | cds-NP_011644.3_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:713956-716097:- | gene-YGR128C_EthanolRed | rna-NM_001181257.3_EthanolRed | cds-NP_011644.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:717817-719958:- | gene-YGR128C_FaliES1 | rna-NM_001181257.3_FaliES1 | cds-NP_011644.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:13891-16032:+ | gene-YGR128C_JAY291 | rna-NM_001181257.3_JAY291 | cds-NP_011644.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:836869-839010:- | gene-YGR128C_MUCL30387 | rna-NM_001181257.3_MUCL30387 | cds-NP_011644.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:729744-731885:- | gene-YGR128C_MUCL30388 | rna-NM_001181257.3_MUCL30388 | cds-NP_011644.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:723641-725782:- | gene-YGR128C_MUCL39482 | rna-NM_001181257.3_MUCL39482 | cds-NP_011644.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:733740-735881:- | gene-YGR128C_MUCL42920 | rna-NM_001181257.3_MUCL42920 | cds-NP_011644.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:747950-750091:- | gene-YGR128C_NCIM3186 | rna-NM_001181257.3_NCIM3186 | cds-NP_011644.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:718342-720483:- | gene-YGR128C_NCYC1407 | rna-NM_001181257.3_NCYC1407 | cds-NP_011644.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:738191-740332:- | gene-YGR128C_PE2H3 | rna-NM_001181257.3_PE2H3 | cds-NP_011644.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:743301-745442:- | gene-YGR128C_PE2H4 | rna-NM_001181257.3_PE2H4 | cds-NP_011644.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:747950-750091:- | gene-YGR128C_S288C | rna-NM_001181257.3_S288C | cds-NP_011644.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:169091-171232:- | gene-YGR128C_SA1 | rna-NM_001181257.3_SA1 | cds-NP_011644.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:738440-740581:- | gene-YGR128C_ThermosaccDry | rna-NM_001181257.3_ThermosaccDry | cds-NP_011644.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:841946-844087:- | gene-YGR128C_VR1 | rna-NM_001181257.3_VR1 | cds-NP_011644.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:40586-42727:- | gene-YGR128C_ZTW1 | rna-NM_001181257.3_ZTW1 | cds-NP_011644.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:728203-730344:- | gene-YGR128C_Sparadoxus | rna-NM_001181257.3_Sparadoxus | cds-NP_011644.3_Sparadoxus | 88.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |