Gene name: UTP6
Reference locus (S288C): YDR449C
Gene biotype: protein_coding
Description: Snorna-binding rrna-processing protein utp6; Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Top 10 interactors (score): UTP11 (0.999); UTP9 (0.999); UTP14 (0.999); EMG1 (0.999); ECM16 (0.999); SOF1 (0.999); UTP22 (0.999); KRE33 (0.999); MPP10 (0.999); UTP4 (0.999); BMS1 (0.999); RRP5 (0.999); BFR2 (0.999); RRP7 (0.999); KRR1 (0.999); BUD21 (0.999); FCF1 (0.999); SLX9 (0.999); ENP1 (0.999); SAS10 (0.999)
Homologues (species, bitscore): UTP6 (Homo sapiens, 113.2); Utp6 (Mus musculus, 114.4); utp6 (Danio rerio, 101.3); utp6 (Xenopus tropicalis, 66.2); CG7246 (Drosophila melanogaster, 67.4); AT4G28200 (Arabidopsis thaliana, 127.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1297479-1298801:- | gene-YDR449C_AKU4011 | rna-NM_001180757.1_AKU4011 | cds-NP_010737.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:175841-177163:- | gene-YDR449C_BG1 | rna-NM_001180757.1_BG1 | cds-NP_010737.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1328929-1330251:- | gene-YDR449C_Bruggeman | rna-NM_001180757.1_Bruggeman | cds-NP_010737.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1306067-1307389:- | gene-YDR449C_CAT1 | rna-NM_001180757.1_CAT1 | cds-NP_010737.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1291785-1293107:- | gene-YDR449C_CBS1585 | rna-NM_001180757.1_CBS1585 | cds-NP_010737.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1311164-1312486:- | gene-YDR449C_CBS436 | rna-NM_001180757.1_CBS436 | cds-NP_010737.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1287426-1288748:- | gene-YDR449C_CBS6412 | rna-NM_001180757.1_CBS6412 | cds-NP_010737.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1310425-1311747:- | gene-YDR449C_CBS6413 | rna-NM_001180757.1_CBS6413 | cds-NP_010737.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1356254-1357576:- | gene-YDR449C_CENPK1137D | rna-NM_001180757.1_CENPK1137D | cds-NP_010737.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1300847-1302169:- | gene-YDR449C_EthanolRed | rna-NM_001180757.1_EthanolRed | cds-NP_010737.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1304400-1305722:- | gene-YDR449C_FaliES1 | rna-NM_001180757.1_FaliES1 | cds-NP_010737.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:2652-3974:- | gene-YDR449C_JAY291 | rna-NM_001180757.1_JAY291 | cds-NP_010737.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1311406-1312728:- | gene-YDR449C_MUCL30387 | rna-NM_001180757.1_MUCL30387 | cds-NP_010737.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1293439-1294761:- | gene-YDR449C_MUCL30388 | rna-NM_001180757.1_MUCL30388 | cds-NP_010737.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1283269-1284591:- | gene-YDR449C_MUCL39482 | rna-NM_001180757.1_MUCL39482 | cds-NP_010737.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1226074-1227396:- | gene-YDR449C_MUCL42920 | rna-NM_001180757.1_MUCL42920 | cds-NP_010737.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1357503-1358825:- | gene-YDR449C_NCIM3186 | rna-NM_001180757.1_NCIM3186 | cds-NP_010737.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1297042-1298364:- | gene-YDR449C_NCYC1407 | rna-NM_001180757.1_NCYC1407 | cds-NP_010737.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1307901-1309223:- | gene-YDR449C_PE2H3 | rna-NM_001180757.1_PE2H3 | cds-NP_010737.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1313459-1314781:- | gene-YDR449C_PE2H4 | rna-NM_001180757.1_PE2H4 | cds-NP_010737.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1357580-1358902:- | gene-YDR449C_S288C | rna-NM_001180757.1_S288C | cds-NP_010737.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:258262-259584:+ | gene-YDR449C_SA1 | rna-NM_001180757.1_SA1 | cds-NP_010737.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1308622-1309944:- | gene-YDR449C_ThermosaccDry | rna-NM_001180757.1_ThermosaccDry | cds-NP_010737.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1324351-1325673:- | gene-YDR449C_VR1 | rna-NM_001180757.1_VR1 | cds-NP_010737.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:351285-352607:- | gene-YDR449C_ZTW1 | rna-NM_001180757.1_ZTW1 | cds-NP_010737.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1311732-1313054:- | gene-YDR449C_Sparadoxus | rna-NM_001180757.1_Sparadoxus | cds-NP_010737.1_Sparadoxus | 90.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |