Gene name: UTP5
Reference locus (S288C): YDR398W
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 5; Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; Belongs to the UTP5 family
Top 10 interactors (score): UTP8 (0.999); RRP5 (0.999); UTP13 (0.999); BMS1 (0.999); UTP11 (0.999); UTP4 (0.999); UTP6 (0.999); IMP3 (0.999); BFR2 (0.999); NOP58 (0.999); KRR1 (0.999); SAS10 (0.999); UTP25 (0.999); NOP1 (0.999); SLX9 (0.999); UTP18 (0.999); IMP4 (0.999); ENP1 (0.999); FCF1 (0.999); RCL1 (0.999)
Homologues (species, bitscore): WDR43 (Homo sapiens, 114.8); Wdr43 (Mus musculus, 114.4); wdr43 (Danio rerio, 120.2); T10B5.3 (Caenorhabditis elegans, 63.2); AT1G15420 (Arabidopsis thaliana, 67.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1207612-1209543:+ | gene-YDR398W_AKU4011 | rna-NM_001180706.1_AKU4011 | cds-NP_010686.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:86096-88027:+ | gene-YDR398W_BG1 | rna-NM_001180706.1_BG1 | cds-NP_010686.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1238497-1240428:+ | gene-YDR398W_Bruggeman | rna-NM_001180706.1_Bruggeman | cds-NP_010686.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1217053-1218984:+ | gene-YDR398W_CAT1 | rna-NM_001180706.1_CAT1 | cds-NP_010686.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1202533-1204464:+ | gene-YDR398W_CBS1585 | rna-NM_001180706.1_CBS1585 | cds-NP_010686.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1221400-1223331:+ | gene-YDR398W_CBS436 | rna-NM_001180706.1_CBS436 | cds-NP_010686.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1198586-1200517:+ | gene-YDR398W_CBS6412 | rna-NM_001180706.1_CBS6412 | cds-NP_010686.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1220441-1222372:+ | gene-YDR398W_CBS6413 | rna-NM_001180706.1_CBS6413 | cds-NP_010686.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1266134-1268065:+ | gene-YDR398W_CENPK1137D | rna-NM_001180706.1_CENPK1137D | cds-NP_010686.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1212018-1213949:+ | gene-YDR398W_EthanolRed | rna-NM_001180706.1_EthanolRed | cds-NP_010686.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1215328-1217259:+ | gene-YDR398W_FaliES1 | rna-NM_001180706.1_FaliES1 | cds-NP_010686.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:38275-40209:- | gene-YDR398W_JAY291 | rna-NM_001180706.1_JAY291 | cds-NP_010686.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1222059-1223990:+ | gene-YDR398W_MUCL30387 | rna-NM_001180706.1_MUCL30387 | cds-NP_010686.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1204170-1206101:+ | gene-YDR398W_MUCL30388 | rna-NM_001180706.1_MUCL30388 | cds-NP_010686.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1193861-1195792:+ | gene-YDR398W_MUCL39482 | rna-NM_001180706.1_MUCL39482 | cds-NP_010686.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1136299-1138230:+ | gene-YDR398W_MUCL42920 | rna-NM_001180706.1_MUCL42920 | cds-NP_010686.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1267394-1269325:+ | gene-YDR398W_NCIM3186 | rna-NM_001180706.1_NCIM3186 | cds-NP_010686.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1207833-1209764:+ | gene-YDR398W_NCYC1407 | rna-NM_001180706.1_NCYC1407 | cds-NP_010686.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1217960-1219894:+ | gene-YDR398W_PE2H3 | rna-NM_001180706.1_PE2H3 | cds-NP_010686.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1223533-1225464:+ | gene-YDR398W_PE2H4 | rna-NM_001180706.1_PE2H4 | cds-NP_010686.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1267471-1269402:+ | gene-YDR398W_S288C | rna-NM_001180706.1_S288C | cds-NP_010686.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:38390-40321:- | gene-YDR398W_SA1 | rna-NM_001180706.1_SA1 | cds-NP_010686.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1219590-1221521:+ | gene-YDR398W_ThermosaccDry | rna-NM_001180706.1_ThermosaccDry | cds-NP_010686.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1234772-1236703:+ | gene-YDR398W_VR1 | rna-NM_001180706.1_VR1 | cds-NP_010686.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:262401-264332:+ | gene-YDR398W_ZTW1 | rna-NM_001180706.1_ZTW1 | cds-NP_010686.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1214706-1216637:+ | gene-YDR398W_Sparadoxus | rna-NM_001180706.1_Sparadoxus | cds-NP_010686.1_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |