Gene name: UTP4
Reference locus (S288C): YDR324C
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 4; Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; member of t-Utp subcomplex involved with transcription of 35S rRNA transcript; Small Subunit processome is also known as SSU processome
Top 10 interactors (score): UTP25 (0.999); HAS1 (0.999); SAS10 (0.999); DIM1 (0.999); NOP58 (0.999); RRP7 (0.999); KRR1 (0.999); RCL1 (0.999); UTP5 (0.999); BUD21 (0.999); YTM1 (0.999); BMS1 (0.999); UTP13 (0.999); RRP5 (0.999); BFR2 (0.999); UTP8 (0.999); IMP3 (0.999); PNO1 (0.999); UTP6 (0.999); UTP11 (0.999)
Homologues (species, bitscore): CIRH1A (Homo sapiens, 177.2); Cirh1a (Mus musculus, 182.6); cirh1a (Danio rerio, 165.2); cirh1a (Xenopus tropicalis, 181.0); l(3)72Dn (Drosophila melanogaster, 115.9); K05C4.5 (Caenorhabditis elegans, 70.1); PCN (Arabidopsis thaliana, 122.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1060459-1062789:- | gene-YDR324C_AKU4011 | rna-NM_001180632.3_AKU4011 | cds-NP_010611.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:68757-71087:+ | gene-YDR324C_BG1 | rna-NM_001180632.3_BG1 | cds-NP_010611.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1088002-1090332:- | gene-YDR324C_Bruggeman | rna-NM_001180632.3_Bruggeman | cds-NP_010611.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1074760-1077090:- | gene-YDR324C_CAT1 | rna-NM_001180632.3_CAT1 | cds-NP_010611.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1054903-1057233:- | gene-YDR324C_CBS1585 | rna-NM_001180632.3_CBS1585 | cds-NP_010611.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1073300-1075630:- | gene-YDR324C_CBS436 | rna-NM_001180632.3_CBS436 | cds-NP_010611.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1051591-1053921:- | gene-YDR324C_CBS6412 | rna-NM_001180632.3_CBS6412 | cds-NP_010611.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1072822-1075152:- | gene-YDR324C_CBS6413 | rna-NM_001180632.3_CBS6413 | cds-NP_010611.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1113071-1115401:- | gene-YDR324C_CENPK1137D | rna-NM_001180632.3_CENPK1137D | cds-NP_010611.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:236001-238331:- | gene-YDR324C_EthanolRed | rna-NM_001180632.3_EthanolRed | cds-NP_010611.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1067216-1069546:- | gene-YDR324C_FaliES1 | rna-NM_001180632.3_FaliES1 | cds-NP_010611.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:19740-22070:- | gene-YDR324C_JAY291 | rna-NM_001180632.3_JAY291 | cds-NP_010611.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1073261-1075591:- | gene-YDR324C_MUCL30387 | rna-NM_001180632.3_MUCL30387 | cds-NP_010611.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1062198-1064528:- | gene-YDR324C_MUCL30388 | rna-NM_001180632.3_MUCL30388 | cds-NP_010611.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1046710-1049040:- | gene-YDR324C_MUCL39482 | rna-NM_001180632.3_MUCL39482 | cds-NP_010611.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:993792-996122:- | gene-YDR324C_MUCL42920 | rna-NM_001180632.3_MUCL42920 | cds-NP_010611.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1114356-1116686:- | gene-YDR324C_NCIM3186 | rna-NM_001180632.3_NCIM3186 | cds-NP_010611.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1060001-1062331:- | gene-YDR324C_NCYC1407 | rna-NM_001180632.3_NCYC1407 | cds-NP_010611.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1071018-1073348:- | gene-YDR324C_PE2H3 | rna-NM_001180632.3_PE2H3 | cds-NP_010611.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1076603-1078933:- | gene-YDR324C_PE2H4 | rna-NM_001180632.3_PE2H4 | cds-NP_010611.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1114433-1116763:- | gene-YDR324C_S288C | rna-NM_001180632.3_S288C | cds-NP_010611.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:85246-87576:- | gene-YDR324C_SA1 | rna-NM_001180632.3_SA1 | cds-NP_010611.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1071489-1073819:- | gene-YDR324C_ThermosaccDry | rna-NM_001180632.3_ThermosaccDry | cds-NP_010611.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1087417-1089747:- | gene-YDR324C_VR1 | rna-NM_001180632.3_VR1 | cds-NP_010611.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:115598-117928:- | gene-YDR324C_ZTW1 | rna-NM_001180632.3_ZTW1 | cds-NP_010611.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1066929-1069258:- | gene-YDR324C_Sparadoxus | rna-NM_001180632.3_Sparadoxus | cds-NP_010611.3_Sparadoxus | 90.7 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |