Gene name: UTP30
Reference locus (S288C): YKR060W
Gene biotype: protein_coding
Description: Ribosome biogenesis protein UTP30; Putative subunit of U3-containing 90S preribosome complex; complex is involved in production of 18S rRNA and assembly of small ribosomal subunit; Belongs to the universal ribosomal protein uL1 family. Highly divergent
Top 10 interactors (score): DIP2 (0.999); UTP6 (0.999); BMS1 (0.999); UTP13 (0.999); RRP5 (0.999); BFR2 (0.999); EMG1 (0.999); UTP15 (0.999); ROK1 (0.999); NOP56 (0.999); UTP22 (0.999); RRP9 (0.999); KRE33 (0.999); UTP10 (0.999); ENP2 (0.999); NOP14 (0.999); UTP7 (0.999); UTP21 (0.999); PWP2 (0.999); SGD1 (0.999)
Homologues (species, bitscore): RSL1D1 (Homo sapiens, 53.5); RSL1D1 (Xenopus tropicalis, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:542562-543386:+ | gene-YKR060W_AKU4011 | rna-NM_001179850.1_AKU4011 | cds-NP_012986.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:100889-101713:- | gene-YKR060W_BG1 | rna-NM_001179850.1_BG1 | cds-NP_012986.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:563988-564812:+ | gene-YKR060W_Bruggeman | rna-NM_001179850.1_Bruggeman | cds-NP_012986.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:560413-561237:+ | gene-YKR060W_CAT1 | rna-NM_001179850.1_CAT1 | cds-NP_012986.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:555053-555877:+ | gene-YKR060W_CBS1585 | rna-NM_001179850.1_CBS1585 | cds-NP_012986.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:553384-554208:+ | gene-YKR060W_CBS436 | rna-NM_001179850.1_CBS436 | cds-NP_012986.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:538343-539167:+ | gene-YKR060W_CBS6412 | rna-NM_001179850.1_CBS6412 | cds-NP_012986.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:554873-555697:+ | gene-YKR060W_CBS6413 | rna-NM_001179850.1_CBS6413 | cds-NP_012986.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:556174-556998:+ | gene-YKR060W_CENPK1137D | rna-NM_001179850.1_CENPK1137D | cds-NP_012986.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:551871-552695:+ | gene-YKR060W_EthanolRed | rna-NM_001179850.1_EthanolRed | cds-NP_012986.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:555771-556595:+ | gene-YKR060W_FaliES1 | rna-NM_001179850.1_FaliES1 | cds-NP_012986.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000410.1:21641-22465:- | gene-YKR060W_JAY291 | rna-NM_001179850.1_JAY291 | cds-NP_012986.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:564386-565210:+ | gene-YKR060W_MUCL30387 | rna-NM_001179850.1_MUCL30387 | cds-NP_012986.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:559000-559824:+ | gene-YKR060W_MUCL30388 | rna-NM_001179850.1_MUCL30388 | cds-NP_012986.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:553882-554706:+ | gene-YKR060W_MUCL39482 | rna-NM_001179850.1_MUCL39482 | cds-NP_012986.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:559902-560726:+ | gene-YKR060W_MUCL42920 | rna-NM_001179850.1_MUCL42920 | cds-NP_012986.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:556507-557331:+ | gene-YKR060W_NCIM3186 | rna-NM_001179850.1_NCIM3186 | cds-NP_012986.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:554305-555129:+ | gene-YKR060W_NCYC1407 | rna-NM_001179850.1_NCYC1407 | cds-NP_012986.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:579461-580285:+ | gene-YKR060W_PE2H3 | rna-NM_001179850.1_PE2H3 | cds-NP_012986.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:563856-564680:+ | gene-YKR060W_PE2H4 | rna-NM_001179850.1_PE2H4 | cds-NP_012986.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:556518-557342:+ | gene-YKR060W_S288C | rna-NM_001179850.1_S288C | cds-NP_012986.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:124499-125323:- | gene-YKR060W_SA1 | rna-NM_001179850.1_SA1 | cds-NP_012986.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:555010-555834:+ | gene-YKR060W_ThermosaccDry | rna-NM_001179850.1_ThermosaccDry | cds-NP_012986.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:554778-555602:+ | gene-YKR060W_VR1 | rna-NM_001179850.1_VR1 | cds-NP_012986.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:552499-553323:+ | gene-YKR060W_ZTW1 | rna-NM_001179850.1_ZTW1 | cds-NP_012986.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:577902-578726:+ | gene-YKR060W_Sparadoxus | rna-NM_001179850.1_Sparadoxus | cds-NP_012986.1_Sparadoxus | 89.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |