Gene name: UTP25
Reference locus (S288C): YIL091C
Gene biotype: protein_coding
Description: Rrna-binding ribosome biosynthesis protein utp25; U3 small nucleolar RNA-associated protein 25; Nucleolar protein; required for 35S pre-RNA processing and 40S ribosomal subunit biogenesis
Top 10 interactors (score): UTP5 (0.999); UTP13 (0.999); UTP15 (0.999); RRP36 (0.999); RRP9 (0.999); DIP2 (0.999); LCP5 (0.999); PWP2 (0.999); SAS10 (0.999); UTP4 (0.999); UTP6 (0.999); BFR2 (0.999); ECM16 (0.999); SOF1 (0.999); UTP22 (0.999); MPP10 (0.999); UTP10 (0.999); NOP14 (0.999); UTP21 (0.999); UTP14 (0.999)
Homologues (species, bitscore): DIEXF (Homo sapiens, 339.3); Diexf (Mus musculus, 320.5); diexf (Danio rerio, 327.4); diexf (Xenopus tropicalis, 260.4); CG3735 (Drosophila melanogaster, 277.7); Y41C4A.9 (Caenorhabditis elegans, 204.1); NOF1 (Arabidopsis thaliana, 300.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:192450-194615:- | gene-YIL091C_AKU4011 | rna-NM_001179439.1_AKU4011 | cds-NP_012175.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:55445-57610:- | gene-YIL091C_BG1 | rna-NM_001179439.1_BG1 | cds-NP_012175.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:197162-199327:- | gene-YIL091C_Bruggeman | rna-NM_001179439.1_Bruggeman | cds-NP_012175.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:189197-191362:- | gene-YIL091C_CAT1 | rna-NM_001179439.1_CAT1 | cds-NP_012175.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:192707-194872:- | gene-YIL091C_CBS1585 | rna-NM_001179439.1_CBS1585 | cds-NP_012175.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:183702-185867:- | gene-YIL091C_CBS436 | rna-NM_001179439.1_CBS436 | cds-NP_012175.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:190087-192252:- | gene-YIL091C_CBS6412 | rna-NM_001179439.1_CBS6412 | cds-NP_012175.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:183739-185904:- | gene-YIL091C_CBS6413 | rna-NM_001179439.1_CBS6413 | cds-NP_012175.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:182741-184906:- | gene-YIL091C_CENPK1137D | rna-NM_001179439.1_CENPK1137D | cds-NP_012175.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:177672-179837:- | gene-YIL091C_EthanolRed | rna-NM_001179439.1_EthanolRed | cds-NP_012175.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:193667-195832:- | gene-YIL091C_FaliES1 | rna-NM_001179439.1_FaliES1 | cds-NP_012175.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:32627-34792:+ | gene-YIL091C_JAY291 | rna-NM_001179439.1_JAY291 | cds-NP_012175.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:194874-197039:- | gene-YIL091C_MUCL30387 | rna-NM_001179439.1_MUCL30387 | cds-NP_012175.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:192671-194836:- | gene-YIL091C_MUCL30388 | rna-NM_001179439.1_MUCL30388 | cds-NP_012175.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:193554-195719:- | gene-YIL091C_MUCL39482 | rna-NM_001179439.1_MUCL39482 | cds-NP_012175.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:196815-198980:- | gene-YIL091C_MUCL42920 | rna-NM_001179439.1_MUCL42920 | cds-NP_012175.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:191030-193195:- | gene-YIL091C_NCIM3186 | rna-NM_001179439.1_NCIM3186 | cds-NP_012175.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:197597-199762:- | gene-YIL091C_NCYC1407 | rna-NM_001179439.1_NCYC1407 | cds-NP_012175.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:192191-194356:- | gene-YIL091C_PE2H3 | rna-NM_001179439.1_PE2H3 | cds-NP_012175.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:186142-188307:- | gene-YIL091C_PE2H4 | rna-NM_001179439.1_PE2H4 | cds-NP_012175.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:191030-193195:- | gene-YIL091C_S288C | rna-NM_001179439.1_S288C | cds-NP_012175.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000111.1:12074-14239:+ | gene-YIL091C_SA1 | rna-NM_001179439.1_SA1 | cds-NP_012175.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:192334-194499:- | gene-YIL091C_ThermosaccDry | rna-NM_001179439.1_ThermosaccDry | cds-NP_012175.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:190004-192169:- | gene-YIL091C_VR1 | rna-NM_001179439.1_VR1 | cds-NP_012175.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:167268-169433:- | gene-YIL091C_ZTW1 | rna-NM_001179439.1_ZTW1 | cds-NP_012175.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:191272-193437:- | gene-YIL091C_Sparadoxus | rna-NM_001179439.1_Sparadoxus | cds-NP_012175.1_Sparadoxus | 89.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |