Gene name: UTP23
Reference locus (S288C): YOR004W
Gene biotype: protein_coding
Description: rRNA-processing protein UTP23; Component of the small subunit processome; involved in 40S ribosomal subunit biogenesis; interacts with snR30 and is required for dissociation of snR30 from large pre-ribosomal particles; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function; essential protein
Top 10 interactors (score): KRR1 (0.999); SAS10 (0.999); UTP11 (0.999); UTP7 (0.999); UTP14 (0.999); KRI1 (0.999); IMP4 (0.999); UTP5 (0.999); ROK1 (0.999); UTP25 (0.998); NOP58 (0.998); HCA4 (0.998); BMS1 (0.997); RRP5 (0.997); EMG1 (0.997); SOF1 (0.997); NOP14 (0.997); NOC4 (0.997); PWP2 (0.997); UTP4 (0.997)
Homologues (species, bitscore): UTP23 (Homo sapiens, 104.0); Utp23 (Mus musculus, 102.8); utp23 (Danio rerio, 119.0); utp23 (Xenopus tropicalis, 107.8); CG17652 (Drosophila melanogaster, 111.7); C34E10.10 (Caenorhabditis elegans, 106.7); MEE21 (Arabidopsis thaliana, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:317954-318718:+ | gene-YOR004W_AKU4011 | rna-NM_001183423.1_AKU4011 | cds-NP_014646.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:133572-134336:+ | gene-YOR004W_BG1 | rna-NM_001183423.1_BG1 | cds-NP_014646.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:320725-321489:+ | gene-YOR004W_Bruggeman | rna-NM_001183423.1_Bruggeman | cds-NP_014646.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:318880-319644:+ | gene-YOR004W_CAT1 | rna-NM_001183423.1_CAT1 | cds-NP_014646.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:312628-313392:+ | gene-YOR004W_CBS1585 | rna-NM_001183423.1_CBS1585 | cds-NP_014646.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:316902-317666:+ | gene-YOR004W_CBS436 | rna-NM_001183423.1_CBS436 | cds-NP_014646.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:311934-312698:+ | gene-YOR004W_CBS6412 | rna-NM_001183423.1_CBS6412 | cds-NP_014646.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:319465-320229:+ | gene-YOR004W_CBS6413 | rna-NM_001183423.1_CBS6413 | cds-NP_014646.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:333275-334039:+ | gene-YOR004W_CENPK1137D | rna-NM_001183423.1_CENPK1137D | cds-NP_014646.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:314715-315479:+ | gene-YOR004W_EthanolRed | rna-NM_001183423.1_EthanolRed | cds-NP_014646.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:318042-318806:+ | gene-YOR004W_FaliES1 | rna-NM_001183423.1_FaliES1 | cds-NP_014646.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:10426-11190:- | gene-YOR004W_JAY291 | rna-NM_001183423.1_JAY291 | cds-NP_014646.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:324939-325703:+ | gene-YOR004W_MUCL30387 | rna-NM_001183423.1_MUCL30387 | cds-NP_014646.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:328375-329139:+ | gene-YOR004W_MUCL30388 | rna-NM_001183423.1_MUCL30388 | cds-NP_014646.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:320111-320875:+ | gene-YOR004W_MUCL39482 | rna-NM_001183423.1_MUCL39482 | cds-NP_014646.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:334965-335729:+ | gene-YOR004W_MUCL42920 | rna-NM_001183423.1_MUCL42920 | cds-NP_014646.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:333481-334245:+ | gene-YOR004W_NCIM3186 | rna-NM_001183423.1_NCIM3186 | cds-NP_014646.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:326796-327560:+ | gene-YOR004W_NCYC1407 | rna-NM_001183423.1_NCYC1407 | cds-NP_014646.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:321496-322260:+ | gene-YOR004W_PE2H3 | rna-NM_001183423.1_PE2H3 | cds-NP_014646.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:331875-332639:+ | gene-YOR004W_PE2H4 | rna-NM_001183423.1_PE2H4 | cds-NP_014646.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:333592-334356:+ | gene-YOR004W_S288C | rna-NM_001183423.1_S288C | cds-NP_014646.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:301563-302327:+ | gene-YOR004W_SA1 | rna-NM_001183423.1_SA1 | cds-NP_014646.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:316613-317377:+ | gene-YOR004W_ThermosaccDry | rna-NM_001183423.1_ThermosaccDry | cds-NP_014646.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:317447-318211:+ | gene-YOR004W_VR1 | rna-NM_001183423.1_VR1 | cds-NP_014646.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:51277-52041:+ | gene-YOR004W_ZTW1 | rna-NM_001183423.1_ZTW1 | cds-NP_014646.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:325156-325917:+ | gene-YOR004W_Sparadoxus | rna-NM_001183423.1_Sparadoxus | cds-NP_014646.1_Sparadoxus | 90.8 | 99.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |