Gene name: UTP21
Reference locus (S288C): YLR409C
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 21; Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; synthetic defect with STI1 Hsp90 cochaperone; human homolog linked to glaucoma; Small Subunit processome is also known as SSU processome
Top 10 interactors (score): SOF1 (0.999); UTP22 (0.999); MPP10 (0.999); KRE33 (0.999); EMG1 (0.999); ECM16 (0.999); BMS1 (0.999); BFR2 (0.999); RRP5 (0.999); UTP11 (0.999); UTP4 (0.999); UTP6 (0.999); ENP1 (0.999); SAS10 (0.999); NOC2 (0.999); CBF5 (0.999); DIM1 (0.999); BUD21 (0.999); KRR1 (0.999); RRP7 (0.999)
Homologues (species, bitscore): WDR36 (Homo sapiens, 459.5); Wdr36 (Mus musculus, 458.0); wdr36 (Danio rerio, 424.5); wdr36 (Xenopus tropicalis, 436.8); CG9799 (Drosophila melanogaster, 373.6); Y45F10D.7 (Caenorhabditis elegans, 251.9); AT4G04940 (Arabidopsis thaliana, 428.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:883931-886750:- | gene-YLR409C_AKU4011 | rna-NM_001182297.3_AKU4011 | cds-NP_013513.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:116093-118912:- | gene-YLR409C_BG1 | rna-NM_001182297.3_BG1 | cds-NP_013513.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:922236-925055:- | gene-YLR409C_Bruggeman | rna-NM_001182297.3_Bruggeman | cds-NP_013513.3_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:917779-920598:- | gene-YLR409C_CAT1 | rna-NM_001182297.3_CAT1 | cds-NP_013513.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:919526-922345:- | gene-YLR409C_CBS1585 | rna-NM_001182297.3_CBS1585 | cds-NP_013513.3_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:903184-906003:- | gene-YLR409C_CBS436 | rna-NM_001182297.3_CBS436 | cds-NP_013513.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:955568-958387:- | gene-YLR409C_CBS6412 | rna-NM_001182297.3_CBS6412 | cds-NP_013513.3_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:919818-922637:- | gene-YLR409C_CBS6413 | rna-NM_001182297.3_CBS6413 | cds-NP_013513.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:919225-922044:- | gene-YLR409C_CENPK1137D | rna-NM_001182297.3_CENPK1137D | cds-NP_013513.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:876474-879293:- | gene-YLR409C_EthanolRed | rna-NM_001182297.3_EthanolRed | cds-NP_013513.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:905784-908603:- | gene-YLR409C_FaliES1 | rna-NM_001182297.3_FaliES1 | cds-NP_013513.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:58941-61760:- | gene-YLR409C_JAY291 | rna-NM_001182297.3_JAY291 | cds-NP_013513.3_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:921102-923921:- | gene-YLR409C_MUCL30387 | rna-NM_001182297.3_MUCL30387 | cds-NP_013513.3_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:927200-930019:- | gene-YLR409C_MUCL30388 | rna-NM_001182297.3_MUCL30388 | cds-NP_013513.3_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:920746-923565:- | gene-YLR409C_MUCL39482 | rna-NM_001182297.3_MUCL39482 | cds-NP_013513.3_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:915402-918221:- | gene-YLR409C_MUCL42920 | rna-NM_001182297.3_MUCL42920 | cds-NP_013513.3_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:934388-937207:- | gene-YLR409C_NCIM3186 | rna-NM_001182297.3_NCIM3186 | cds-NP_013513.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:929927-932746:- | gene-YLR409C_NCYC1407 | rna-NM_001182297.3_NCYC1407 | cds-NP_013513.3_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:916322-919141:- | gene-YLR409C_PE2H3 | rna-NM_001182297.3_PE2H3 | cds-NP_013513.3_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:916066-918885:- | gene-YLR409C_PE2H4 | rna-NM_001182297.3_PE2H4 | cds-NP_013513.3_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:934414-937233:- | gene-YLR409C_S288C | rna-NM_001182297.3_S288C | cds-NP_013513.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:111475-114294:+ | gene-YLR409C_SA1 | rna-NM_001182297.3_SA1 | cds-NP_013513.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:908863-911682:- | gene-YLR409C_ThermosaccDry | rna-NM_001182297.3_ThermosaccDry | cds-NP_013513.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:921412-924231:- | gene-YLR409C_VR1 | rna-NM_001182297.3_VR1 | cds-NP_013513.3_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:245580-248399:- | gene-YLR409C_ZTW1 | rna-NM_001182297.3_ZTW1 | cds-NP_013513.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:894398-897217:- | gene-YLR409C_Sparadoxus | rna-NM_001182297.3_Sparadoxus | cds-NP_013513.3_Sparadoxus | 91.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |