Gene name: UTP20
Reference locus (S288C): YBL004W
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 20; Component of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA; Belongs to the UTP20 family
Top 10 interactors (score): UTP7 (0.999); UTP10 (0.999); ENP2 (0.999); RRP9 (0.999); DIP2 (0.999); UTP22 (0.999); KRE33 (0.999); MPP10 (0.999); SNU13 (0.999); SOF1 (0.999); ECM16 (0.999); NOP56 (0.999); NAN1 (0.999); EMG1 (0.999); UTP15 (0.999); PWP2 (0.999); UTP14 (0.999); NOC4 (0.999); UTP21 (0.999); NOP14 (0.999)
Homologues (species, bitscore): UTP20 (Homo sapiens, 505.0); Utp20 (Mus musculus, 467.6); UTP20 (Danio rerio, 470.3); UTP20 (Xenopus tropicalis, 520.0); CG4554 (Drosophila melanogaster, 337.4); tag-184 (Caenorhabditis elegans, 201.1); AT4G30990 (Arabidopsis thaliana, 360.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:216022-223503:+ | gene-YBL004W_AKU4011 | rna-NM_001178244.1_AKU4011 | cds-NP_009551.2_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:206135-213616:+ | gene-YBL004W_BG1 | rna-NM_001178244.1_BG1 | cds-NP_009551.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:216721-224202:+ | gene-YBL004W_Bruggeman | rna-NM_001178244.1_Bruggeman | cds-NP_009551.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:219005-226486:+ | gene-YBL004W_CAT1 | rna-NM_001178244.1_CAT1 | cds-NP_009551.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:208062-215543:+ | gene-YBL004W_CBS1585 | rna-NM_001178244.1_CBS1585 | cds-NP_009551.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:216307-223788:+ | gene-YBL004W_CBS436 | rna-NM_001178244.1_CBS436 | cds-NP_009551.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:306562-314043:+ | gene-YBL004W_CBS6412 | rna-NM_001178244.1_CBS6412 | cds-NP_009551.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:213427-220908:+ | gene-YBL004W_CBS6413 | rna-NM_001178244.1_CBS6413 | cds-NP_009551.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:227324-234805:+ | gene-YBL004W_CENPK1137D | rna-NM_001178244.1_CENPK1137D | cds-NP_009551.2_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:343020-350501:+ | gene-YBL004W_EthanolRed | rna-NM_001178244.1_EthanolRed | cds-NP_009551.2_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:230870-238351:+ | gene-YBL004W_FaliES1 | rna-NM_001178244.1_FaliES1 | cds-NP_009551.2_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:58995-66476:- | gene-YBL004W_JAY291 | rna-NM_001178244.1_JAY291 | cds-NP_009551.2_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:217078-224559:+ | gene-YBL004W_MUCL30387 | rna-NM_001178244.1_MUCL30387 | cds-NP_009551.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:217018-224499:+ | gene-YBL004W_MUCL30388 | rna-NM_001178244.1_MUCL30388 | cds-NP_009551.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:208043-215524:+ | gene-YBL004W_MUCL39482 | rna-NM_001178244.1_MUCL39482 | cds-NP_009551.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:215487-222968:+ | gene-YBL004W_MUCL42920 | rna-NM_001178244.1_MUCL42920 | cds-NP_009551.2_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:227433-234914:+ | gene-YBL004W_NCIM3186 | rna-NM_001178244.1_NCIM3186 | cds-NP_009551.2_NCIM3186 | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:209218-216699:+ | gene-YBL004W_NCYC1407 | rna-NM_001178244.1_NCYC1407 | cds-NP_009551.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:221382-228863:+ | gene-YBL004W_PE2H3 | rna-NM_001178244.1_PE2H3 | cds-NP_009551.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:219034-226515:+ | gene-YBL004W_PE2H4 | rna-NM_001178244.1_PE2H4 | cds-NP_009551.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:227636-235117:+ | gene-YBL004W_S288C | rna-NM_001178244.1_S288C | cds-NP_009551.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:67665-75146:- | gene-YBL004W_SA1 | rna-NM_001178244.1_SA1 | cds-NP_009551.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:230576-238057:+ | gene-YBL004W_ThermosaccDry | rna-NM_001178244.1_ThermosaccDry | cds-NP_009551.2_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:212722-220203:+ | gene-YBL004W_VR1 | rna-NM_001178244.1_VR1 | cds-NP_009551.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:206810-214291:+ | gene-YBL004W_ZTW1 | rna-NM_001178244.1_ZTW1 | cds-NP_009551.2_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:242350-249831:+ | gene-YBL004W_Sparadoxus | rna-NM_001178244.1_Sparadoxus | cds-NP_009551.2_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |