Gene name: UTP18
Reference locus (S288C): YJL069C
Gene biotype: protein_coding
Description: Small-subunit processome protein involved in pre-18S rRNA maturation; part of a subunit of the 90S preribosomal particle capable of interacting directly with the 5' ETS of the 35S pre-rRNA; contains WD40 repeats
Top 10 interactors (score): TSR1 (0.999); RCL1 (0.999); NOP58 (0.999); UTP8 (0.999); UTP13 (0.999); YTM1 (0.999); UTP5 (0.999); IMP3 (0.999); PNO1 (0.999); IMP4 (0.999); NOP1 (0.999); UTP25 (0.999); LCP5 (0.999); PWP2 (0.999); MTR4 (0.999); ERB1 (0.999); UTP30 (0.999); ENP2 (0.999); DBP8 (0.999); RRP12 (0.999)
Homologues (species, bitscore): UTP18 (Homo sapiens, 181.4); Utp18 (Mus musculus, 195.3); utp18 (Danio rerio, 133.7); utp18 (Xenopus tropicalis, 159.8); wcd (Drosophila melanogaster, 141.0); B0280.9 (Caenorhabditis elegans, 125.6); AT5G14050 (Arabidopsis thaliana, 219.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:293786-295570:- | gene-YJL069C_AKU4011 | rna-NM_001181502.1_AKU4011 | cds-NP_012466.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:318938-320722:+ | gene-YJL069C_BG1 | rna-NM_001181502.1_BG1 | cds-NP_012466.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:306325-308109:- | gene-YJL069C_Bruggeman | rna-NM_001181502.1_Bruggeman | cds-NP_012466.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:310425-312209:- | gene-YJL069C_CAT1 | rna-NM_001181502.1_CAT1 | cds-NP_012466.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:305447-307231:- | gene-YJL069C_CBS1585 | rna-NM_001181502.1_CBS1585 | cds-NP_012466.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:323454-325238:- | gene-YJL069C_CBS436 | rna-NM_001181502.1_CBS436 | cds-NP_012466.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:294544-296328:- | gene-YJL069C_CBS6412 | rna-NM_001181502.1_CBS6412 | cds-NP_012466.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:295900-297684:- | gene-YJL069C_CBS6413 | rna-NM_001181502.1_CBS6413 | cds-NP_012466.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:293392-295176:- | gene-YJL069C_CENPK1137D | rna-NM_001181502.1_CENPK1137D | cds-NP_012466.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:297624-299408:- | gene-YJL069C_EthanolRed | rna-NM_001181502.1_EthanolRed | cds-NP_012466.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:309199-310983:- | gene-YJL069C_FaliES1 | rna-NM_001181502.1_FaliES1 | cds-NP_012466.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:106786-108570:- | gene-YJL069C_JAY291 | rna-NM_001181502.1_JAY291 | cds-NP_012466.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:307482-309266:- | gene-YJL069C_MUCL30387 | rna-NM_001181502.1_MUCL30387 | cds-NP_012466.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:303518-305302:- | gene-YJL069C_MUCL30388 | rna-NM_001181502.1_MUCL30388 | cds-NP_012466.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:298196-299980:- | gene-YJL069C_MUCL39482 | rna-NM_001181502.1_MUCL39482 | cds-NP_012466.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:304846-306630:- | gene-YJL069C_MUCL42920 | rna-NM_001181502.1_MUCL42920 | cds-NP_012466.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:310901-312685:- | gene-YJL069C_NCIM3186 | rna-NM_001181502.1_NCIM3186 | cds-NP_012466.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:296892-298676:- | gene-YJL069C_NCYC1407 | rna-NM_001181502.1_NCYC1407 | cds-NP_012466.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:309246-311030:- | gene-YJL069C_PE2H3 | rna-NM_001181502.1_PE2H3 | cds-NP_012466.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:308890-310674:- | gene-YJL069C_PE2H4 | rna-NM_001181502.1_PE2H4 | cds-NP_012466.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:310922-312706:- | gene-YJL069C_S288C | rna-NM_001181502.1_S288C | cds-NP_012466.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:106808-108592:- | gene-YJL069C_SA1 | rna-NM_001181502.1_SA1 | cds-NP_012466.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:302612-304396:- | gene-YJL069C_ThermosaccDry | rna-NM_001181502.1_ThermosaccDry | cds-NP_012466.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:304792-306576:- | gene-YJL069C_VR1 | rna-NM_001181502.1_VR1 | cds-NP_012466.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:283998-285782:- | gene-YJL069C_ZTW1 | rna-NM_001181502.1_ZTW1 | cds-NP_012466.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:308030-309814:- | gene-YJL069C_Sparadoxus | rna-NM_001181502.1_Sparadoxus | cds-NP_012466.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |