Gene name: UTP15
Reference locus (S288C): YMR093W
Gene biotype: protein_coding
Description: Snorna-binding rrna-processing protein utp15; Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Top 10 interactors (score): KRR1 (0.999); RRP7 (0.999); DIM1 (0.999); NOP58 (0.999); BUD21 (0.999); RCL1 (0.999); UTP18 (0.999); UTP11 (0.999); ENP1 (0.999); UTP6 (0.999); UTP4 (0.999); IMP3 (0.999); PNO1 (0.999); DBP8 (0.999); SAS10 (0.999); RRP12 (0.999); UTP25 (0.999); NOP1 (0.999); TSR1 (0.999); IMP4 (0.999)
Homologues (species, bitscore): UTP15 (Homo sapiens, 253.4); Utp15 (Mus musculus, 246.1); utp15 (Danio rerio, 256.9); utp15 (Xenopus tropicalis, 239.6); CG3071 (Drosophila melanogaster, 234.2); Y23H5B.5 (Caenorhabditis elegans, 117.9); SWA1 (Arabidopsis thaliana, 195.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:491952-493493:+ | gene-YMR093W_AKU4011 | rna-NM_001182593.1_AKU4011 | cds-NP_013811.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:49516-51057:- | gene-YMR093W_BG1 | rna-NM_001182593.1_BG1 | cds-NP_013811.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:434380-435921:+ | gene-YMR093W_Bruggeman | rna-NM_001182593.1_Bruggeman | cds-NP_013811.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:434703-436244:+ | gene-YMR093W_CAT1 | rna-NM_001182593.1_CAT1 | cds-NP_013811.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:424895-426436:+ | gene-YMR093W_CBS1585 | rna-NM_001182593.1_CBS1585 | cds-NP_013811.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:430220-431761:+ | gene-YMR093W_CBS436 | rna-NM_001182593.1_CBS436 | cds-NP_013811.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:537991-539532:+ | gene-YMR093W_CBS6412 | rna-NM_001182593.1_CBS6412 | cds-NP_013811.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:424152-425693:+ | gene-YMR093W_CBS6413 | rna-NM_001182593.1_CBS6413 | cds-NP_013811.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:448123-449664:+ | gene-YMR093W_CENPK1137D | rna-NM_001182593.1_CENPK1137D | cds-NP_013811.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:424786-426327:+ | gene-YMR093W_EthanolRed | rna-NM_001182593.1_EthanolRed | cds-NP_013811.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:427952-429493:+ | gene-YMR093W_FaliES1 | rna-NM_001182593.1_FaliES1 | cds-NP_013811.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:7720-9261:- | gene-YMR093W_JAY291 | rna-NM_001182593.1_JAY291 | cds-NP_013811.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:431311-432852:+ | gene-YMR093W_MUCL30387 | rna-NM_001182593.1_MUCL30387 | cds-NP_013811.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:435298-436839:+ | gene-YMR093W_MUCL30388 | rna-NM_001182593.1_MUCL30388 | cds-NP_013811.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:425204-426745:+ | gene-YMR093W_MUCL39482 | rna-NM_001182593.1_MUCL39482 | cds-NP_013811.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:431869-433410:+ | gene-YMR093W_MUCL42920 | rna-NM_001182593.1_MUCL42920 | cds-NP_013811.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:453969-455510:+ | gene-YMR093W_NCIM3186 | rna-NM_001182593.1_NCIM3186 | cds-NP_013811.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:425097-426638:+ | gene-YMR093W_NCYC1407 | rna-NM_001182593.1_NCYC1407 | cds-NP_013811.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:430818-432359:+ | gene-YMR093W_PE2H3 | rna-NM_001182593.1_PE2H3 | cds-NP_013811.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:436913-438454:+ | gene-YMR093W_PE2H4 | rna-NM_001182593.1_PE2H4 | cds-NP_013811.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:454015-455556:+ | gene-YMR093W_S288C | rna-NM_001182593.1_S288C | cds-NP_013811.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:94610-96151:- | gene-YMR093W_SA1 | rna-NM_001182593.1_SA1 | cds-NP_013811.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:425755-427296:+ | gene-YMR093W_ThermosaccDry | rna-NM_001182593.1_ThermosaccDry | cds-NP_013811.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:437404-438945:+ | gene-YMR093W_VR1 | rna-NM_001182593.1_VR1 | cds-NP_013811.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:402026-403567:+ | gene-YMR093W_ZTW1 | rna-NM_001182593.1_ZTW1 | cds-NP_013811.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:438478-440019:+ | gene-YMR093W_Sparadoxus | rna-NM_001182593.1_Sparadoxus | cds-NP_013811.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |