Gene name: UTP13
Reference locus (S288C): YLR222C
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 13; Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Top 10 interactors (score): RRP9 (0.999); IMP3 (0.999); PNO1 (0.999); UTP8 (0.999); RPA135 (0.999); YTM1 (0.999); PRP43 (0.999); NAN1 (0.999); MRD1 (0.999); NOP56 (0.999); ROK1 (0.999); UTP15 (0.999); DIP2 (0.999); UTP30 (0.999); NOP7 (0.999); ENP2 (0.999); LCP5 (0.999); PWP2 (0.999); MTR4 (0.999); ERB1 (0.999)
Homologues (species, bitscore): TBL3 (Homo sapiens, 397.1); Tbl3 (Mus musculus, 406.8); tbl3 (Danio rerio, 357.8); tbl3 (Xenopus tropicalis, 295.8); CG1671 (Drosophila melanogaster, 249.2); Y53C12B.1 (Caenorhabditis elegans, 288.1); TOZ (Arabidopsis thaliana, 384.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:533464-535917:- | gene-YLR222C_AKU4011 | rna-NM_001182109.1_AKU4011 | cds-NP_013323.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:90719-93172:- | gene-YLR222C_BG1 | rna-NM_001182109.1_BG1 | cds-NP_013323.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:573686-576139:- | gene-YLR222C_Bruggeman | rna-NM_001182109.1_Bruggeman | cds-NP_013323.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:573335-575788:- | gene-YLR222C_CAT1 | rna-NM_001182109.1_CAT1 | cds-NP_013323.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:568956-571409:- | gene-YLR222C_CBS1585 | rna-NM_001182109.1_CBS1585 | cds-NP_013323.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:559154-561607:- | gene-YLR222C_CBS436 | rna-NM_001182109.1_CBS436 | cds-NP_013323.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:537518-539971:- | gene-YLR222C_CBS6412 | rna-NM_001182109.1_CBS6412 | cds-NP_013323.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:569253-571706:- | gene-YLR222C_CBS6413 | rna-NM_001182109.1_CBS6413 | cds-NP_013323.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:564041-566494:- | gene-YLR222C_CENPK1137D | rna-NM_001182109.1_CENPK1137D | cds-NP_013323.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:532977-535430:- | gene-YLR222C_EthanolRed | rna-NM_001182109.1_EthanolRed | cds-NP_013323.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:561904-564357:- | gene-YLR222C_FaliES1 | rna-NM_001182109.1_FaliES1 | cds-NP_013323.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:88803-91256:- | gene-YLR222C_JAY291 | rna-NM_001182109.1_JAY291 | cds-NP_013323.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:574547-577000:- | gene-YLR222C_MUCL30387 | rna-NM_001182109.1_MUCL30387 | cds-NP_013323.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:578668-581121:- | gene-YLR222C_MUCL30388 | rna-NM_001182109.1_MUCL30388 | cds-NP_013323.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:569939-572392:- | gene-YLR222C_MUCL39482 | rna-NM_001182109.1_MUCL39482 | cds-NP_013323.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:570434-572887:- | gene-YLR222C_MUCL42920 | rna-NM_001182109.1_MUCL42920 | cds-NP_013323.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:579292-581745:- | gene-YLR222C_NCIM3186 | rna-NM_001182109.1_NCIM3186 | cds-NP_013323.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:562358-564811:- | gene-YLR222C_NCYC1407 | rna-NM_001182109.1_NCYC1407 | cds-NP_013323.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:566606-569059:- | gene-YLR222C_PE2H3 | rna-NM_001182109.1_PE2H3 | cds-NP_013323.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:566350-568803:- | gene-YLR222C_PE2H4 | rna-NM_001182109.1_PE2H4 | cds-NP_013323.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:579318-581771:- | gene-YLR222C_S288C | rna-NM_001182109.1_S288C | cds-NP_013323.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:88854-91307:- | gene-YLR222C_SA1 | rna-NM_001182109.1_SA1 | cds-NP_013323.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:564397-566850:- | gene-YLR222C_ThermosaccDry | rna-NM_001182109.1_ThermosaccDry | cds-NP_013323.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:575740-578193:- | gene-YLR222C_VR1 | rna-NM_001182109.1_VR1 | cds-NP_013323.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:88685-91138:- | gene-YLR222C_ZTW1 | rna-NM_001182109.1_ZTW1 | cds-NP_013323.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:550566-553019:- | gene-YLR222C_Sparadoxus | rna-NM_001182109.1_Sparadoxus | cds-NP_013323.1_Sparadoxus | 89.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |