Gene name: UTP11
Reference locus (S288C): YKL099C
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 11; Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit
Top 10 interactors (score): IMP4 (0.999); NOP1 (0.999); SAS10 (0.999); ENP2 (0.999); NOP14 (0.999); UTP7 (0.999); NOC4 (0.999); UTP21 (0.999); EBP2 (0.999); UTP23 (0.999); PWP2 (0.999); UTP14 (0.999); LCP5 (0.999); EMG1 (0.999); UTP15 (0.999); SNU13 (0.999); SOF1 (0.999); DIP2 (0.999); RRP9 (0.999); MPP10 (0.999)
Homologues (species, bitscore): UTP11L (Homo sapiens, 107.5); Utp11l (Mus musculus, 114.0); utp11l (Danio rerio, 117.1); utp11 (Xenopus tropicalis, 102.8); CG1789 (Drosophila melanogaster, 80.5); C16C10.2 (Caenorhabditis elegans, 103.2); EDA14 (Arabidopsis thaliana, 110.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:242274-243026:- | gene-YKL099C_AKU4011 | rna-NM_001179665.1_AKU4011 | cds-NP_012823.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:219396-220148:- | gene-YKL099C_BG1 | rna-NM_001179665.1_BG1 | cds-NP_012823.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:260450-261202:- | gene-YKL099C_Bruggeman | rna-NM_001179665.1_Bruggeman | cds-NP_012823.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:255243-255995:- | gene-YKL099C_CAT1 | rna-NM_001179665.1_CAT1 | cds-NP_012823.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:254516-255268:- | gene-YKL099C_CBS1585 | rna-NM_001179665.1_CBS1585 | cds-NP_012823.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:253108-253860:- | gene-YKL099C_CBS436 | rna-NM_001179665.1_CBS436 | cds-NP_012823.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:239144-239896:- | gene-YKL099C_CBS6412 | rna-NM_001179665.1_CBS6412 | cds-NP_012823.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:254972-255724:- | gene-YKL099C_CBS6413 | rna-NM_001179665.1_CBS6413 | cds-NP_012823.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:255361-256113:- | gene-YKL099C_CENPK1137D | rna-NM_001179665.1_CENPK1137D | cds-NP_012823.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:252967-253719:- | gene-YKL099C_EthanolRed | rna-NM_001179665.1_EthanolRed | cds-NP_012823.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:253780-254532:- | gene-YKL099C_FaliES1 | rna-NM_001179665.1_FaliES1 | cds-NP_012823.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:76107-76859:- | gene-YKL099C_JAY291 | rna-NM_001179665.1_JAY291 | cds-NP_012823.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:262243-262995:- | gene-YKL099C_MUCL30387 | rna-NM_001179665.1_MUCL30387 | cds-NP_012823.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:256642-257394:- | gene-YKL099C_MUCL30388 | rna-NM_001179665.1_MUCL30388 | cds-NP_012823.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:254301-255053:- | gene-YKL099C_MUCL39482 | rna-NM_001179665.1_MUCL39482 | cds-NP_012823.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:258937-259689:- | gene-YKL099C_MUCL42920 | rna-NM_001179665.1_MUCL42920 | cds-NP_012823.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:255709-256461:- | gene-YKL099C_NCIM3186 | rna-NM_001179665.1_NCIM3186 | cds-NP_012823.2_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:254495-255247:- | gene-YKL099C_NCYC1407 | rna-NM_001179665.1_NCYC1407 | cds-NP_012823.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:261582-262334:- | gene-YKL099C_PE2H3 | rna-NM_001179665.1_PE2H3 | cds-NP_012823.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:257868-258620:- | gene-YKL099C_PE2H4 | rna-NM_001179665.1_PE2H4 | cds-NP_012823.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:255720-256472:- | gene-YKL099C_S288C | rna-NM_001179665.1_S288C | cds-NP_012823.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:171831-172583:- | gene-YKL099C_SA1 | rna-NM_001179665.1_SA1 | cds-NP_012823.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:254485-255237:- | gene-YKL099C_ThermosaccDry | rna-NM_001179665.1_ThermosaccDry | cds-NP_012823.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:253842-254594:- | gene-YKL099C_VR1 | rna-NM_001179665.1_VR1 | cds-NP_012823.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:253049-253801:- | gene-YKL099C_ZTW1 | rna-NM_001179665.1_ZTW1 | cds-NP_012823.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:270028-270780:- | gene-YKL099C_Sparadoxus | rna-NM_001179665.1_Sparadoxus | cds-NP_012823.2_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |