Gene name: UTP10
Reference locus (S288C): YJL109C
Gene biotype: protein_coding
Description: Snorna-binding rrna-processing protein utp10; Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; mutant has increased aneuploidy tolerance
Top 10 interactors (score): UTP25 (0.999); PNO1 (0.999); UTP5 (0.999); UTP13 (0.999); UTP8 (0.999); RRP12 (0.999); HAS1 (0.999); UTP18 (0.999); IMP4 (0.999); DIP2 (0.999); ENP2 (0.999); UTP30 (0.999); ERB1 (0.999); MTR4 (0.999); LCP5 (0.999); PWP2 (0.999); NOP58 (0.999); RCL1 (0.999); NOP1 (0.999); TSR1 (0.999)
Homologues (species, bitscore): HEATR1 (Homo sapiens, 201.8); Heatr1 (Mus musculus, 190.3); heatr1 (Danio rerio, 186.4); heatr1 (Xenopus tropicalis, 193.4); l(2)k09022 (Drosophila melanogaster, 159.5); toe-1 (Caenorhabditis elegans, 67.4); AT3G06530 (Arabidopsis thaliana, 111.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:194730-200039:- | gene-YJL109C_AKU4011 | rna-NM_001181542.1_AKU4011 | cds-NP_012426.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:414402-419711:+ | gene-YJL109C_BG1 | rna-NM_001181542.1_BG1 | cds-NP_012426.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:206167-211476:- | gene-YJL109C_Bruggeman | rna-NM_001181542.1_Bruggeman | cds-NP_012426.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:211076-216385:- | gene-YJL109C_CAT1 | rna-NM_001181542.1_CAT1 | cds-NP_012426.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:206391-211700:- | gene-YJL109C_CBS1585 | rna-NM_001181542.1_CBS1585 | cds-NP_012426.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:224492-229801:- | gene-YJL109C_CBS436 | rna-NM_001181542.1_CBS436 | cds-NP_012426.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:195488-200797:- | gene-YJL109C_CBS6412 | rna-NM_001181542.1_CBS6412 | cds-NP_012426.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:196843-202152:- | gene-YJL109C_CBS6413 | rna-NM_001181542.1_CBS6413 | cds-NP_012426.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:194449-199758:- | gene-YJL109C_CENPK1137D | rna-NM_001181542.1_CENPK1137D | cds-NP_012426.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:198580-203889:- | gene-YJL109C_EthanolRed | rna-NM_001181542.1_EthanolRed | cds-NP_012426.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:210157-215466:- | gene-YJL109C_FaliES1 | rna-NM_001181542.1_FaliES1 | cds-NP_012426.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:7785-13094:- | gene-YJL109C_JAY291 | rna-NM_001181542.1_JAY291 | cds-NP_012426.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:208434-213743:- | gene-YJL109C_MUCL30387 | rna-NM_001181542.1_MUCL30387 | cds-NP_012426.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:204513-209822:- | gene-YJL109C_MUCL30388 | rna-NM_001181542.1_MUCL30388 | cds-NP_012426.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:199148-204457:- | gene-YJL109C_MUCL39482 | rna-NM_001181542.1_MUCL39482 | cds-NP_012426.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:205333-210642:- | gene-YJL109C_MUCL42920 | rna-NM_001181542.1_MUCL42920 | cds-NP_012426.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:211979-217288:- | gene-YJL109C_NCIM3186 | rna-NM_001181542.1_NCIM3186 | cds-NP_012426.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:197838-203147:- | gene-YJL109C_NCYC1407 | rna-NM_001181542.1_NCYC1407 | cds-NP_012426.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:210209-215518:- | gene-YJL109C_PE2H3 | rna-NM_001181542.1_PE2H3 | cds-NP_012426.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:209853-215162:- | gene-YJL109C_PE2H4 | rna-NM_001181542.1_PE2H4 | cds-NP_012426.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:212000-217309:- | gene-YJL109C_S288C | rna-NM_001181542.1_S288C | cds-NP_012426.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:7716-13025:- | gene-YJL109C_SA1 | rna-NM_001181542.1_SA1 | cds-NP_012426.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:203566-208875:- | gene-YJL109C_ThermosaccDry | rna-NM_001181542.1_ThermosaccDry | cds-NP_012426.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:203988-209297:- | gene-YJL109C_VR1 | rna-NM_001181542.1_VR1 | cds-NP_012426.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:184932-190241:- | gene-YJL109C_ZTW1 | rna-NM_001181542.1_ZTW1 | cds-NP_012426.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:208994-214303:- | gene-YJL109C_Sparadoxus | rna-NM_001181542.1_Sparadoxus | cds-NP_012426.1_Sparadoxus | 90.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |