Gene name: USV1
Reference locus (S288C): YPL230W
Gene biotype: protein_coding
Description: Nutrient and stress factor 1; Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in growth on non-fermentable carbon sources, response to salt stress and cell wall biosynthesis; USV1 has a paralog, RGM1, that arose from the whole genome duplication
Top 10 interactors (score): IGD1 (0.928); SOL4 (0.927); XBP1 (0.927); GLC3 (0.915); DCS2 (0.902); PGM2 (0.884); UIP4 (0.863); GIP2 (0.85); GAD1 (0.848); YNL194C (0.844); TMA10 (0.843); MSC1 (0.836); RTN2 (0.827); OM45 (0.802); TSL1 (0.783); YLR149C (0.778); AIM17 (0.75); TFS1 (0.743); RGI1 (0.733); YNL195C (0.73)
Homologues (species, bitscore): KLF3 (Homo sapiens, 73.9); Klf3 (Mus musculus, 73.9); klf12b (Danio rerio, 70.1); klf3 (Xenopus tropicalis, 72.0); Sp1 (Drosophila melanogaster, 65.5); egrh-1 (Caenorhabditis elegans, 65.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:93063-94238:+ | gene-YPL230W_AKU4011 | rna-NM_001184044.1_AKU4011 | cds-NP_015094.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:299004-300182:+ | gene-YPL230W_BG1 | rna-NM_001184044.1_BG1 | cds-NP_015094.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:118273-119451:+ | gene-YPL230W_Bruggeman | rna-NM_001184044.1_Bruggeman | cds-NP_015094.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:115310-116488:+ | gene-YPL230W_CAT1 | rna-NM_001184044.1_CAT1 | cds-NP_015094.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:97376-98551:+ | gene-YPL230W_CBS1585 | rna-NM_001184044.1_CBS1585 | cds-NP_015094.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:111795-112973:+ | gene-YPL230W_CBS436 | rna-NM_001184044.1_CBS436 | cds-NP_015094.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:102541-103716:+ | gene-YPL230W_CBS6412 | rna-NM_001184044.1_CBS6412 | cds-NP_015094.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:93526-94701:+ | gene-YPL230W_CBS6413 | rna-NM_001184044.1_CBS6413 | cds-NP_015094.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:115240-116415:+ | gene-YPL230W_CENPK1137D | rna-NM_001184044.1_CENPK1137D | cds-NP_015094.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:92462-93637:+ | gene-YPL230W_EthanolRed | rna-NM_001184044.1_EthanolRed | cds-NP_015094.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:99269-100444:+ | gene-YPL230W_FaliES1 | rna-NM_001184044.1_FaliES1 | cds-NP_015094.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:10079-11257:- | gene-YPL230W_JAY291 | rna-NM_001184044.1_JAY291 | cds-NP_015094.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:110111-111289:+ | gene-YPL230W_MUCL30387 | rna-NM_001184044.1_MUCL30387 | cds-NP_015094.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:108549-109727:+ | gene-YPL230W_MUCL30388 | rna-NM_001184044.1_MUCL30388 | cds-NP_015094.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:90506-91681:+ | gene-YPL230W_MUCL39482 | rna-NM_001184044.1_MUCL39482 | cds-NP_015094.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:109378-110556:+ | gene-YPL230W_MUCL42920 | rna-NM_001184044.1_MUCL42920 | cds-NP_015094.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:115295-116470:+ | gene-YPL230W_NCIM3186 | rna-NM_001184044.1_NCIM3186 | cds-NP_015094.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:96952-98127:+ | gene-YPL230W_NCYC1407 | rna-NM_001184044.1_NCYC1407 | cds-NP_015094.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:104684-105862:+ | gene-YPL230W_PE2H3 | rna-NM_001184044.1_PE2H3 | cds-NP_015094.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:104327-105505:+ | gene-YPL230W_PE2H4 | rna-NM_001184044.1_PE2H4 | cds-NP_015094.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:115312-116487:+ | gene-YPL230W_S288C | rna-NM_001184044.1_S288C | cds-NP_015094.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:57191-58369:+ | gene-YPL230W_SA1 | rna-NM_001184044.1_SA1 | cds-NP_015094.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:99270-100445:+ | gene-YPL230W_ThermosaccDry | rna-NM_001184044.1_ThermosaccDry | cds-NP_015094.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:339149-340327:+ | gene-YPL230W_VR1 | rna-NM_001184044.1_VR1 | cds-NP_015094.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:98811-99986:+ | gene-YPL230W_ZTW1 | rna-NM_001184044.1_ZTW1 | cds-NP_015094.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:100333-101502:+ | gene-YPL230W_Sparadoxus | rna-NM_001184044.1_Sparadoxus | cds-NP_015094.1_Sparadoxus | 84.9 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |