Gene name: USO1
Reference locus (S288C): YDL058W
Gene biotype: protein_coding
Description: Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex
Top 10 interactors (score): YPT1 (0.999); BET1 (0.994); SLY1 (0.991); GRH1 (0.987); SEC26 (0.986); SED5 (0.984); YKT6 (0.982); BOS1 (0.975); RUD3 (0.964); SEC22 (0.959); GEA2 (0.944); SEC13 (0.941); SEC18 (0.936); BET3 (0.926); ARF1 (0.922); SEC23 (0.921); COG3 (0.919); SEC27 (0.918); COY1 (0.918); BET5 (0.917)
Homologues (species, bitscore): USO1 (Homo sapiens, 176.4); Uso1 (Mus musculus, 170.6); uso1 (Danio rerio, 174.5); uso1 (Xenopus tropicalis, 144.1); p115 (Drosophila melanogaster, 166.4); uso-1 (Caenorhabditis elegans, 114.0); GC6 (Arabidopsis thaliana, 136.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:330244-335604:+ | gene-YDL058W_AKU4011 | rna-NM_001180117.1_AKU4011 | cds-NP_010225.1_AKU4011 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:214412-219784:- | gene-YDL058W_BG1 | rna-NM_001180117.1_BG1 | cds-NP_010225.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:348033-353423:+ | gene-YDL058W_Bruggeman | rna-NM_001180117.1_Bruggeman | cds-NP_010225.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:344404-349776:+ | gene-YDL058W_CAT1 | rna-NM_001180117.1_CAT1 | cds-NP_010225.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:328495-333882:+ | gene-YDL058W_CBS1585 | rna-NM_001180117.1_CBS1585 | cds-NP_010225.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:345217-350589:+ | gene-YDL058W_CBS436 | rna-NM_001180117.1_CBS436 | cds-NP_010225.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:326592-331952:+ | gene-YDL058W_CBS6412 | rna-NM_001180117.1_CBS6412 | cds-NP_010225.1_CBS6412 | 99.0 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:346581-351968:+ | gene-YDL058W_CBS6413 | rna-NM_001180117.1_CBS6413 | cds-NP_010225.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:344487-349857:+ | gene-YDL058W_CENPK1137D | rna-NM_001180117.1_CENPK1137D | cds-NP_010225.1_CENPK1137D | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:341047-346434:+ | gene-YDL058W_EthanolRed | rna-NM_001180117.1_EthanolRed | cds-NP_010225.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:347294-352681:+ | gene-YDL058W_FaliES1 | rna-NM_001180117.1_FaliES1 | cds-NP_010225.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000240.1:1662-7034:+ | gene-YDL058W_JAY291 | rna-NM_001180117.1_JAY291 | cds-NP_010225.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:345424-350814:+ | gene-YDL058W_MUCL30387 | rna-NM_001180117.1_MUCL30387 | cds-NP_010225.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:336550-341940:+ | gene-YDL058W_MUCL30388 | rna-NM_001180117.1_MUCL30388 | cds-NP_010225.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:329606-334993:+ | gene-YDL058W_MUCL39482 | rna-NM_001180117.1_MUCL39482 | cds-NP_010225.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:251620-257010:+ | gene-YDL058W_MUCL42920 | rna-NM_001180117.1_MUCL42920 | cds-NP_010225.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:345588-350960:+ | gene-YDL058W_NCIM3186 | rna-NM_001180117.1_NCIM3186 | cds-NP_010225.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:329630-334990:+ | gene-YDL058W_NCYC1407 | rna-NM_001180117.1_NCYC1407 | cds-NP_010225.1_NCYC1407 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:336447-341819:+ | gene-YDL058W_PE2H3 | rna-NM_001180117.1_PE2H3 | cds-NP_010225.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:336447-341819:+ | gene-YDL058W_PE2H4 | rna-NM_001180117.1_PE2H4 | cds-NP_010225.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:345665-351037:+ | gene-YDL058W_S288C | rna-NM_001180117.1_S288C | cds-NP_010225.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:83897-89269:- | gene-YDL058W_SA1 | rna-NM_001180117.1_SA1 | cds-NP_010225.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:346746-352133:+ | gene-YDL058W_ThermosaccDry | rna-NM_001180117.1_ThermosaccDry | cds-NP_010225.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:349335-354707:+ | gene-YDL058W_VR1 | rna-NM_001180117.1_VR1 | cds-NP_010225.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:344681-350067:+ | gene-YDL058W_ZTW1 | rna-NM_001180117.1_ZTW1 | cds-NP_010225.1_ZTW1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:346814-352179:+ | gene-YDL058W_Sparadoxus | rna-NM_001180117.1_Sparadoxus | cds-NP_010225.1_Sparadoxus | 86.2 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |