Gene name: USE1
Reference locus (S288C): YGL098W
Gene biotype: protein_coding
Description: Essential SNARE protein localized to the ER; involved in retrograde traffic from the Golgi to the ER and Sey1p-independent homotypic ER fusion; required for efficient nuclear fusion during mating; forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p
Top 10 interactors (score): UFE1 (0.999); SEC20 (0.999); TIP20 (0.998); SEC22 (0.997); YKT6 (0.995); SEC39 (0.994); SED5 (0.993); SLY1 (0.993); BOS1 (0.991); DSL1 (0.99); BET1 (0.981); NYV1 (0.972); GOS1 (0.972); SEC9 (0.97); VAM3 (0.969); SNC1 (0.969); SSO1 (0.945); SPO20 (0.937); VTI1 (0.937); VAM7 (0.917)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:320658-321395:+ | gene-YGL098W_AKU4011 | rna-NM_001180963.1_AKU4011 | cds-NP_011417.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:84321-85058:- | gene-YGL098W_BG1 | rna-NM_001180963.1_BG1 | cds-NP_011417.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:322812-323549:+ | gene-YGL098W_Bruggeman | rna-NM_001180963.1_Bruggeman | cds-NP_011417.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:318349-319086:+ | gene-YGL098W_CAT1 | rna-NM_001180963.1_CAT1 | cds-NP_011417.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:323982-324719:+ | gene-YGL098W_CBS1585 | rna-NM_001180963.1_CBS1585 | cds-NP_011417.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:318279-319016:+ | gene-YGL098W_CBS436 | rna-NM_001180963.1_CBS436 | cds-NP_011417.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:308675-309412:+ | gene-YGL098W_CBS6412 | rna-NM_001180963.1_CBS6412 | cds-NP_011417.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:318280-319017:+ | gene-YGL098W_CBS6413 | rna-NM_001180963.1_CBS6413 | cds-NP_011417.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:317523-318260:+ | gene-YGL098W_CENPK1137D | rna-NM_001180963.1_CENPK1137D | cds-NP_011417.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:309729-310466:+ | gene-YGL098W_EthanolRed | rna-NM_001180963.1_EthanolRed | cds-NP_011417.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:312284-313021:+ | gene-YGL098W_FaliES1 | rna-NM_001180963.1_FaliES1 | cds-NP_011417.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:33797-34534:- | gene-YGL098W_JAY291 | rna-NM_001180963.1_JAY291 | cds-NP_011417.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:319782-320519:+ | gene-YGL098W_MUCL30387 | rna-NM_001180963.1_MUCL30387 | cds-NP_011417.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:322866-323603:+ | gene-YGL098W_MUCL30388 | rna-NM_001180963.1_MUCL30388 | cds-NP_011417.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:320495-321232:+ | gene-YGL098W_MUCL39482 | rna-NM_001180963.1_MUCL39482 | cds-NP_011417.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:324445-325182:+ | gene-YGL098W_MUCL42920 | rna-NM_001180963.1_MUCL42920 | cds-NP_011417.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:317342-318079:+ | gene-YGL098W_NCIM3186 | rna-NM_001180963.1_NCIM3186 | cds-NP_011417.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:311985-312722:+ | gene-YGL098W_NCYC1407 | rna-NM_001180963.1_NCYC1407 | cds-NP_011417.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:313384-314121:+ | gene-YGL098W_PE2H3 | rna-NM_001180963.1_PE2H3 | cds-NP_011417.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:318382-319119:+ | gene-YGL098W_PE2H4 | rna-NM_001180963.1_PE2H4 | cds-NP_011417.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:317342-318079:+ | gene-YGL098W_S288C | rna-NM_001180963.1_S288C | cds-NP_011417.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:62127-62864:+ | gene-YGL098W_SA1 | rna-NM_001180963.1_SA1 | cds-NP_011417.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:312496-313233:+ | gene-YGL098W_ThermosaccDry | rna-NM_001180963.1_ThermosaccDry | cds-NP_011417.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:422100-422837:+ | gene-YGL098W_VR1 | rna-NM_001180963.1_VR1 | cds-NP_011417.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:309894-310631:+ | gene-YGL098W_ZTW1 | rna-NM_001180963.1_ZTW1 | cds-NP_011417.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:316293-317030:+ | gene-YGL098W_Sparadoxus | rna-NM_001180963.1_Sparadoxus | cds-NP_011417.1_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |