Gene name: USA1
Reference locus (S288C): YML029W
Gene biotype: protein_coding
Description: U1 SNP1-associating protein 1; Scaffold subunit of the Hrd1p ubiquitin ligase; also promotes ligase oligomerization; involved in ER-associated protein degradation (ERAD); interacts with the U1 snRNP-specific protein, Snp1p
Top 10 interactors (score): UBX2 (0.999); HRD3 (0.999); DER1 (0.999); HRD1 (0.999); CDC48 (0.999); YOS9 (0.999); CUE1 (0.995); SSM4 (0.985); NPL4 (0.98); UFD1 (0.98); UBC7 (0.973); ERV41 (0.918); DFM1 (0.818); MNL1 (0.777); KAR2 (0.777); PRC1 (0.724); SEC61 (0.714); UFD2 (0.622); PDR5 (0.615); HMG2 (0.611)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:266956-269472:+ | gene-YML029W_AKU4011 | rna-NM_001182387.1_AKU4011 | cds-NP_013683.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:273399-275915:- | gene-YML029W_BG1 | rna-NM_001182387.1_BG1 | cds-NP_013683.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:206910-209426:+ | gene-YML029W_Bruggeman | rna-NM_001182387.1_Bruggeman | cds-NP_013683.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:209423-211939:+ | gene-YML029W_CAT1 | rna-NM_001182387.1_CAT1 | cds-NP_013683.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:199905-202421:+ | gene-YML029W_CBS1585 | rna-NM_001182387.1_CBS1585 | cds-NP_013683.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:205443-207959:+ | gene-YML029W_CBS436 | rna-NM_001182387.1_CBS436 | cds-NP_013683.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:313644-316160:+ | gene-YML029W_CBS6412 | rna-NM_001182387.1_CBS6412 | cds-NP_013683.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:199163-201679:+ | gene-YML029W_CBS6413 | rna-NM_001182387.1_CBS6413 | cds-NP_013683.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:211885-214401:+ | gene-YML029W_CENPK1137D | rna-NM_001182387.1_CENPK1137D | cds-NP_013683.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:199932-202448:+ | gene-YML029W_EthanolRed | rna-NM_001182387.1_EthanolRed | cds-NP_013683.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:202896-205412:+ | gene-YML029W_FaliES1 | rna-NM_001182387.1_FaliES1 | cds-NP_013683.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:6725-9242:- | gene-YML029W_JAY291 | rna-NM_001182387.1_JAY291 | cds-NP_013683.1_JAY291 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:204642-207158:+ | gene-YML029W_MUCL30387 | rna-NM_001182387.1_MUCL30387 | cds-NP_013683.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:208619-211135:+ | gene-YML029W_MUCL30388 | rna-NM_001182387.1_MUCL30388 | cds-NP_013683.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:200191-202707:+ | gene-YML029W_MUCL39482 | rna-NM_001182387.1_MUCL39482 | cds-NP_013683.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:205748-208264:+ | gene-YML029W_MUCL42920 | rna-NM_001182387.1_MUCL42920 | cds-NP_013683.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:217316-219832:+ | gene-YML029W_NCIM3186 | rna-NM_001182387.1_NCIM3186 | cds-NP_013683.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:200134-202650:+ | gene-YML029W_NCYC1407 | rna-NM_001182387.1_NCYC1407 | cds-NP_013683.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:206034-208550:+ | gene-YML029W_PE2H3 | rna-NM_001182387.1_PE2H3 | cds-NP_013683.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:212129-214645:+ | gene-YML029W_PE2H4 | rna-NM_001182387.1_PE2H4 | cds-NP_013683.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:217362-219878:+ | gene-YML029W_S288C | rna-NM_001182387.1_S288C | cds-NP_013683.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:18971-21487:- | gene-YML029W_SA1 | rna-NM_001182387.1_SA1 | cds-NP_013683.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:199969-202485:+ | gene-YML029W_ThermosaccDry | rna-NM_001182387.1_ThermosaccDry | cds-NP_013683.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:203975-206491:+ | gene-YML029W_VR1 | rna-NM_001182387.1_VR1 | cds-NP_013683.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:179022-181538:+ | gene-YML029W_ZTW1 | rna-NM_001182387.1_ZTW1 | cds-NP_013683.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:210748-213264:+ | gene-YML029W_Sparadoxus | rna-NM_001182387.1_Sparadoxus | cds-NP_013683.1_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |