Gene name: URB2
Reference locus (S288C): YJR041C
Gene biotype: protein_coding
Description: Protein required for normal metabolism of the rRNA primary transcript; nucleolar protein; proposed to be involved in ribosome biogenesis
Top 10 interactors (score): URB1 (0.998); DBP6 (0.992); RRP5 (0.979); RSA3 (0.971); PWP2 (0.97); HAS1 (0.959); NOP8 (0.957); UTP10 (0.957); ERB1 (0.955); DIP2 (0.955); RPA190 (0.954); DBP9 (0.953); RRP12 (0.936); UTP13 (0.933); NOC2 (0.933); KRE33 (0.926); MTR4 (0.923); UTP21 (0.915); DBP7 (0.914); UTP4 (0.912)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:481938-485462:- | gene-YJR041C_AKU4011 | rna-NM_001181699.3_AKU4011 | cds-NP_012575.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:127492-131016:+ | gene-YJR041C_BG1 | rna-NM_001181699.3_BG1 | cds-NP_012575.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:495975-499499:- | gene-YJR041C_Bruggeman | rna-NM_001181699.3_Bruggeman | cds-NP_012575.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:499904-503428:- | gene-YJR041C_CAT1 | rna-NM_001181699.3_CAT1 | cds-NP_012575.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:493517-497041:- | gene-YJR041C_CBS1585 | rna-NM_001181699.3_CBS1585 | cds-NP_012575.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:512466-515990:- | gene-YJR041C_CBS436 | rna-NM_001181699.3_CBS436 | cds-NP_012575.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:481723-485247:- | gene-YJR041C_CBS6412 | rna-NM_001181699.3_CBS6412 | cds-NP_012575.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:483968-487492:- | gene-YJR041C_CBS6413 | rna-NM_001181699.3_CBS6413 | cds-NP_012575.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:492607-496131:- | gene-YJR041C_CENPK1137D | rna-NM_001181699.3_CENPK1137D | cds-NP_012575.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:486868-490392:- | gene-YJR041C_EthanolRed | rna-NM_001181699.3_EthanolRed | cds-NP_012575.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:498085-501609:- | gene-YJR041C_FaliES1 | rna-NM_001181699.3_FaliES1 | cds-NP_012575.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000250.1:12933-16457:- | gene-YJR041C_JAY291 | rna-NM_001181699.3_JAY291 | cds-NP_012575.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:496285-499809:- | gene-YJR041C_MUCL30387 | rna-NM_001181699.3_MUCL30387 | cds-NP_012575.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:492832-496356:- | gene-YJR041C_MUCL30388 | rna-NM_001181699.3_MUCL30388 | cds-NP_012575.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:486977-490501:- | gene-YJR041C_MUCL39482 | rna-NM_001181699.3_MUCL39482 | cds-NP_012575.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:492239-495763:- | gene-YJR041C_MUCL42920 | rna-NM_001181699.3_MUCL42920 | cds-NP_012575.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:510218-513742:- | gene-YJR041C_NCIM3186 | rna-NM_001181699.3_NCIM3186 | cds-NP_012575.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:484820-488344:- | gene-YJR041C_NCYC1407 | rna-NM_001181699.3_NCYC1407 | cds-NP_012575.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:503155-506679:- | gene-YJR041C_PE2H3 | rna-NM_001181699.3_PE2H3 | cds-NP_012575.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:496851-500375:- | gene-YJR041C_PE2H4 | rna-NM_001181699.3_PE2H4 | cds-NP_012575.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:510239-513763:- | gene-YJR041C_S288C | rna-NM_001181699.3_S288C | cds-NP_012575.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:294745-298269:- | gene-YJR041C_SA1 | rna-NM_001181699.3_SA1 | cds-NP_012575.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:491773-495297:- | gene-YJR041C_ThermosaccDry | rna-NM_001181699.3_ThermosaccDry | cds-NP_012575.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:494004-497528:- | gene-YJR041C_VR1 | rna-NM_001181699.3_VR1 | cds-NP_012575.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:471658-475182:- | gene-YJR041C_ZTW1 | rna-NM_001181699.3_ZTW1 | cds-NP_012575.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:496381-499902:- | gene-YJR041C_Sparadoxus | rna-NM_001181699.3_Sparadoxus | cds-NP_012575.3_Sparadoxus | 86.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |