Gene name: URB1
Reference locus (S288C): YKL014C
Gene biotype: protein_coding
Description: Protein required for the normal accumulation of 25S and 5.8S rRNAs; nucleolar protein; associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit
Top 10 interactors (score): URB2 (0.998); UTP10 (0.998); RRP5 (0.998); KRE33 (0.995); RPA135 (0.992); DBP6 (0.992); ERB1 (0.991); BMS1 (0.99); MAK5 (0.989); DRS1 (0.989); DIP2 (0.989); PWP2 (0.989); HCA4 (0.988); DBP9 (0.988); NOC2 (0.984); RPA190 (0.984); UTP21 (0.981); NOP4 (0.981); MDN1 (0.981); NOP8 (0.981)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:397637-402931:- | gene-YKL014C_AKU4011 | rna-NM_001179580.3_AKU4011 | cds-NP_012911.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:240972-246266:+ | gene-YKL014C_BG1 | rna-NM_001179580.3_BG1 | cds-NP_012911.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:419342-424636:- | gene-YKL014C_Bruggeman | rna-NM_001179580.3_Bruggeman | cds-NP_012911.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:414449-419743:- | gene-YKL014C_CAT1 | rna-NM_001179580.3_CAT1 | cds-NP_012911.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:410357-415651:- | gene-YKL014C_CBS1585 | rna-NM_001179580.3_CBS1585 | cds-NP_012911.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:409220-414514:- | gene-YKL014C_CBS436 | rna-NM_001179580.3_CBS436 | cds-NP_012911.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:394513-399807:- | gene-YKL014C_CBS6412 | rna-NM_001179580.3_CBS6412 | cds-NP_012911.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:410212-415506:- | gene-YKL014C_CBS6413 | rna-NM_001179580.3_CBS6413 | cds-NP_012911.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:411296-416590:- | gene-YKL014C_CENPK1137D | rna-NM_001179580.3_CENPK1137D | cds-NP_012911.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:408134-413428:- | gene-YKL014C_EthanolRed | rna-NM_001179580.3_EthanolRed | cds-NP_012911.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:410224-415518:- | gene-YKL014C_FaliES1 | rna-NM_001179580.3_FaliES1 | cds-NP_012911.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:15533-20827:+ | gene-YKL014C_JAY291 | rna-NM_001179580.3_JAY291 | cds-NP_012911.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:418657-423951:- | gene-YKL014C_MUCL30387 | rna-NM_001179580.3_MUCL30387 | cds-NP_012911.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:414266-419560:- | gene-YKL014C_MUCL30388 | rna-NM_001179580.3_MUCL30388 | cds-NP_012911.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:409674-414968:- | gene-YKL014C_MUCL39482 | rna-NM_001179580.3_MUCL39482 | cds-NP_012911.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:415503-420797:- | gene-YKL014C_MUCL42920 | rna-NM_001179580.3_MUCL42920 | cds-NP_012911.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:411608-416902:- | gene-YKL014C_NCIM3186 | rna-NM_001179580.3_NCIM3186 | cds-NP_012911.3_NCIM3186 | 95.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:409866-415160:- | gene-YKL014C_NCYC1407 | rna-NM_001179580.3_NCYC1407 | cds-NP_012911.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:434557-439851:- | gene-YKL014C_PE2H3 | rna-NM_001179580.3_PE2H3 | cds-NP_012911.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:419299-424593:- | gene-YKL014C_PE2H4 | rna-NM_001179580.3_PE2H4 | cds-NP_012911.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:411619-416913:- | gene-YKL014C_S288C | rna-NM_001179580.3_S288C | cds-NP_012911.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:89901-95195:- | gene-YKL014C_SA1 | rna-NM_001179580.3_SA1 | cds-NP_012911.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:410323-415617:- | gene-YKL014C_ThermosaccDry | rna-NM_001179580.3_ThermosaccDry | cds-NP_012911.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:409579-414873:- | gene-YKL014C_VR1 | rna-NM_001179580.3_VR1 | cds-NP_012911.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:408351-413645:- | gene-YKL014C_ZTW1 | rna-NM_001179580.3_ZTW1 | cds-NP_012911.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:433331-438628:- | gene-YKL014C_Sparadoxus | rna-NM_001179580.3_Sparadoxus | cds-NP_012911.3_Sparadoxus | 88.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |