Gene name: URA7
Reference locus (S288C): YBL039C
Gene biotype: protein_coding
Description: Major CTP synthase isozyme (see also URA8); catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis; capable of forming cytoplasmic filaments termed cytoophidium, especially during conditions of glucose depletion; URA7 has a paralog, URA8, that arose from the whole genome duplication
Top 10 interactors (score): URA8 (0.999); GUA1 (0.998); RPA135 (0.993); ARX1 (0.981); LIA1 (0.978); RRB1 (0.965); ERB1 (0.964); YNK1 (0.963); AAH1 (0.961); BRX1 (0.961); NOP56 (0.955); NOG1 (0.953); MRT4 (0.945); PWP1 (0.945); YTM1 (0.944); ASN2 (0.944); CIC1 (0.936); HAS1 (0.936); NOP1 (0.936); RPA190 (0.934)
Homologues (species, bitscore): CTPS1 (Homo sapiens, 684.1); Ctps (Mus musculus, 688.7); ctps1a (Danio rerio, 688.7); ctps1 (Xenopus tropicalis, 679.9); CTPsyn (Drosophila melanogaster, 634.0); ctps-1 (Caenorhabditis elegans, 550.1); emb2742 (Arabidopsis thaliana, 665.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:137604-139343:- | gene-YBL039C_AKU4011 | rna-NM_001178279.1_AKU4011 | cds-NP_009514.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:128430-130169:- | gene-YBL039C_BG1 | rna-NM_001178279.1_BG1 | cds-NP_009514.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:138199-139938:- | gene-YBL039C_Bruggeman | rna-NM_001178279.1_Bruggeman | cds-NP_009514.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:140827-142566:- | gene-YBL039C_CAT1 | rna-NM_001178279.1_CAT1 | cds-NP_009514.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:130144-131883:- | gene-YBL039C_CBS1585 | rna-NM_001178279.1_CBS1585 | cds-NP_009514.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:138661-140400:- | gene-YBL039C_CBS436 | rna-NM_001178279.1_CBS436 | cds-NP_009514.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:228898-230637:- | gene-YBL039C_CBS6412 | rna-NM_001178279.1_CBS6412 | cds-NP_009514.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:135715-137454:- | gene-YBL039C_CBS6413 | rna-NM_001178279.1_CBS6413 | cds-NP_009514.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:137746-139485:- | gene-YBL039C_CENPK1137D | rna-NM_001178279.1_CENPK1137D | cds-NP_009514.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:151562-153301:- | gene-YBL039C_EthanolRed | rna-NM_001178279.1_EthanolRed | cds-NP_009514.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:152412-154151:- | gene-YBL039C_FaliES1 | rna-NM_001178279.1_FaliES1 | cds-NP_009514.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:55054-56793:- | gene-YBL039C_JAY291 | rna-NM_001178279.1_JAY291 | cds-NP_009514.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:137576-139315:- | gene-YBL039C_MUCL30387 | rna-NM_001178279.1_MUCL30387 | cds-NP_009514.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:138850-140589:- | gene-YBL039C_MUCL30388 | rna-NM_001178279.1_MUCL30388 | cds-NP_009514.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:130319-132058:- | gene-YBL039C_MUCL39482 | rna-NM_001178279.1_MUCL39482 | cds-NP_009514.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:137161-138900:- | gene-YBL039C_MUCL42920 | rna-NM_001178279.1_MUCL42920 | cds-NP_009514.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:143786-145525:- | gene-YBL039C_NCIM3186 | rna-NM_001178279.1_NCIM3186 | cds-NP_009514.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:131456-133195:- | gene-YBL039C_NCYC1407 | rna-NM_001178279.1_NCYC1407 | cds-NP_009514.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:137731-139470:- | gene-YBL039C_PE2H3 | rna-NM_001178279.1_PE2H3 | cds-NP_009514.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:135375-137114:- | gene-YBL039C_PE2H4 | rna-NM_001178279.1_PE2H4 | cds-NP_009514.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:143989-145728:- | gene-YBL039C_S288C | rna-NM_001178279.1_S288C | cds-NP_009514.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:28582-30321:- | gene-YBL039C_SA1 | rna-NM_001178279.1_SA1 | cds-NP_009514.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:152376-154115:- | gene-YBL039C_ThermosaccDry | rna-NM_001178279.1_ThermosaccDry | cds-NP_009514.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:134560-136299:- | gene-YBL039C_VR1 | rna-NM_001178279.1_VR1 | cds-NP_009514.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:129078-130817:- | gene-YBL039C_ZTW1 | rna-NM_001178279.1_ZTW1 | cds-NP_009514.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:163958-165697:- | gene-YBL039C_Sparadoxus | rna-NM_001178279.1_Sparadoxus | cds-NP_009514.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |