Gene name: UPS1
Reference locus (S288C): YLR193C
Gene biotype: protein_coding
Description: Protein UPS1, mitochondrial; Phosphatidic acid transfer protein; plays a role in phospholipid metabolism by transporting phosphatidic acid from the outer to the inner mitochondrial membrane; localizes to the mitochondrial intermembrane space; null mutant has altered cardiolipin and phosphatidic acid levels; ortholog of human PRELI; Belongs to the slowmo family
Top 10 interactors (score): MDM35 (0.999); TAM41 (0.939); UPS2 (0.921); CRD1 (0.906); MDM31 (0.874); PHB1 (0.868); PSD1 (0.86); PGS1 (0.842); GEP4 (0.842); TIM17 (0.838); PTR2 (0.835); MGM1 (0.823); MDM32 (0.811); MDM34 (0.798); UPS3 (0.795); MDM10 (0.771); CLD1 (0.76); FZO1 (0.751); ATP23 (0.738); YME1 (0.734)
Homologues (species, bitscore): PRELID1 (Homo sapiens, 100.1); Prelid1 (Mus musculus, 100.9); prelid1a (Danio rerio, 103.6); prelid1 (Xenopus tropicalis, 105.1); prel (Drosophila melanogaster, 90.1); B0334.4 (Caenorhabditis elegans, 63.9); AT5G13070 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:494129-494656:- | gene-YLR193C_AKU4011 | rna-NM_001182080.1_AKU4011 | cds-NP_013294.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:51310-51837:- | gene-YLR193C_BG1 | rna-NM_001182080.1_BG1 | cds-NP_013294.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:534379-534906:- | gene-YLR193C_Bruggeman | rna-NM_001182080.1_Bruggeman | cds-NP_013294.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:533974-534501:- | gene-YLR193C_CAT1 | rna-NM_001182080.1_CAT1 | cds-NP_013294.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:529626-530153:- | gene-YLR193C_CBS1585 | rna-NM_001182080.1_CBS1585 | cds-NP_013294.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:519766-520293:- | gene-YLR193C_CBS436 | rna-NM_001182080.1_CBS436 | cds-NP_013294.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:498183-498710:- | gene-YLR193C_CBS6412 | rna-NM_001182080.1_CBS6412 | cds-NP_013294.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:529918-530445:- | gene-YLR193C_CBS6413 | rna-NM_001182080.1_CBS6413 | cds-NP_013294.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:524656-525183:- | gene-YLR193C_CENPK1137D | rna-NM_001182080.1_CENPK1137D | cds-NP_013294.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:493656-494183:- | gene-YLR193C_EthanolRed | rna-NM_001182080.1_EthanolRed | cds-NP_013294.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:522583-523110:- | gene-YLR193C_FaliES1 | rna-NM_001182080.1_FaliES1 | cds-NP_013294.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:49483-50010:- | gene-YLR193C_JAY291 | rna-NM_001182080.1_JAY291 | cds-NP_013294.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:534399-534926:- | gene-YLR193C_MUCL30387 | rna-NM_001182080.1_MUCL30387 | cds-NP_013294.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:539332-539859:- | gene-YLR193C_MUCL30388 | rna-NM_001182080.1_MUCL30388 | cds-NP_013294.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:530607-531134:- | gene-YLR193C_MUCL39482 | rna-NM_001182080.1_MUCL39482 | cds-NP_013294.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:531103-531630:- | gene-YLR193C_MUCL42920 | rna-NM_001182080.1_MUCL42920 | cds-NP_013294.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:539983-540510:- | gene-YLR193C_NCIM3186 | rna-NM_001182080.1_NCIM3186 | cds-NP_013294.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:523036-523563:- | gene-YLR193C_NCYC1407 | rna-NM_001182080.1_NCYC1407 | cds-NP_013294.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:527272-527799:- | gene-YLR193C_PE2H3 | rna-NM_001182080.1_PE2H3 | cds-NP_013294.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:527016-527543:- | gene-YLR193C_PE2H4 | rna-NM_001182080.1_PE2H4 | cds-NP_013294.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:540009-540536:- | gene-YLR193C_S288C | rna-NM_001182080.1_S288C | cds-NP_013294.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:49541-50068:- | gene-YLR193C_SA1 | rna-NM_001182080.1_SA1 | cds-NP_013294.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:525086-525613:- | gene-YLR193C_ThermosaccDry | rna-NM_001182080.1_ThermosaccDry | cds-NP_013294.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:536385-536912:- | gene-YLR193C_VR1 | rna-NM_001182080.1_VR1 | cds-NP_013294.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:49375-49902:- | gene-YLR193C_ZTW1 | rna-NM_001182080.1_ZTW1 | cds-NP_013294.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:511147-511674:- | gene-YLR193C_Sparadoxus | rna-NM_001182080.1_Sparadoxus | cds-NP_013294.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |