Gene name: UPF3
Reference locus (S288C): YGR072W
Gene biotype: protein_coding
Description: Component of the nonsense-mediated mRNA decay (NMD) pathway; along with Nam7p and Nmd2p; involved in decay of mRNA containing nonsense codons; involved in telomere maintenance
Top 10 interactors (score): NMD2 (0.999); NAM7 (0.999); FAL1 (0.998); SUP35 (0.995); XRN1 (0.965); SUP45 (0.964); CWC22 (0.956); STO1 (0.95); CBC2 (0.912); EBS1 (0.895); MEX67 (0.887); CDC33 (0.872); LSM1 (0.847); DHR2 (0.843); ECM32 (0.828); SKI7 (0.806); DCP2 (0.804); PAB1 (0.802); TOR1 (0.796); DHH1 (0.793)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:617997-619160:+ | gene-YGR072W_AKU4011 | rna-NM_001181201.1_AKU4011 | cds-NP_011586.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:54264-55427:+ | gene-YGR072W_BG1 | rna-NM_001181201.1_BG1 | cds-NP_011586.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:620271-621434:+ | gene-YGR072W_Bruggeman | rna-NM_001181201.1_Bruggeman | cds-NP_011586.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:618703-619866:+ | gene-YGR072W_CAT1 | rna-NM_001181201.1_CAT1 | cds-NP_011586.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:619291-620454:+ | gene-YGR072W_CBS1585 | rna-NM_001181201.1_CBS1585 | cds-NP_011586.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:620601-621764:+ | gene-YGR072W_CBS436 | rna-NM_001181201.1_CBS436 | cds-NP_011586.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:612116-613279:+ | gene-YGR072W_CBS6412 | rna-NM_001181201.1_CBS6412 | cds-NP_011586.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:615999-617162:+ | gene-YGR072W_CBS6413 | rna-NM_001181201.1_CBS6413 | cds-NP_011586.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:634010-635173:+ | gene-YGR072W_CENPK1137D | rna-NM_001181201.1_CENPK1137D | cds-NP_011586.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:606250-607413:+ | gene-YGR072W_EthanolRed | rna-NM_001181201.1_EthanolRed | cds-NP_011586.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:609717-610880:+ | gene-YGR072W_FaliES1 | rna-NM_001181201.1_FaliES1 | cds-NP_011586.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:60651-61814:+ | gene-YGR072W_JAY291 | rna-NM_001181201.1_JAY291 | cds-NP_011586.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:616931-618094:+ | gene-YGR072W_MUCL30387 | rna-NM_001181201.1_MUCL30387 | cds-NP_011586.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:620301-621464:+ | gene-YGR072W_MUCL30388 | rna-NM_001181201.1_MUCL30388 | cds-NP_011586.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:615142-616305:+ | gene-YGR072W_MUCL39482 | rna-NM_001181201.1_MUCL39482 | cds-NP_011586.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:624932-626095:+ | gene-YGR072W_MUCL42920 | rna-NM_001181201.1_MUCL42920 | cds-NP_011586.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:634304-635467:+ | gene-YGR072W_NCIM3186 | rna-NM_001181201.1_NCIM3186 | cds-NP_011586.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:609323-610486:+ | gene-YGR072W_NCYC1407 | rna-NM_001181201.1_NCYC1407 | cds-NP_011586.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:612556-613719:+ | gene-YGR072W_PE2H3 | rna-NM_001181201.1_PE2H3 | cds-NP_011586.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:617680-618843:+ | gene-YGR072W_PE2H4 | rna-NM_001181201.1_PE2H4 | cds-NP_011586.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:634304-635467:+ | gene-YGR072W_S288C | rna-NM_001181201.1_S288C | cds-NP_011586.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:60846-62009:+ | gene-YGR072W_SA1 | rna-NM_001181201.1_SA1 | cds-NP_011586.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:629043-630206:+ | gene-YGR072W_ThermosaccDry | rna-NM_001181201.1_ThermosaccDry | cds-NP_011586.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:726001-727164:+ | gene-YGR072W_VR1 | rna-NM_001181201.1_VR1 | cds-NP_011586.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:84513-85676:+ | gene-YGR072W_ZTW1 | rna-NM_001181201.1_ZTW1 | cds-NP_011586.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:619635-620795:+ | gene-YGR072W_Sparadoxus | rna-NM_001181201.1_Sparadoxus | cds-NP_011586.1_Sparadoxus | 87.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |