Gene name: UFO1
Reference locus (S288C): YML088W
Gene biotype: protein_coding
Description: F-box receptor protein; subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; binds to phosphorylated Ho endonuclease, allowing its ubiquitination by SCF and subsequent degradation
Top 10 interactors (score): SKP1 (0.999); CDC53 (0.991); DDI1 (0.959); UFD2 (0.845); DSK2 (0.824); HRT1 (0.823); RAD23 (0.806); RPN10 (0.8); CUL3 (0.78); RPN1 (0.75); UFD4 (0.728); ALO1 (0.708); SFG1 (0.695); RTT101 (0.688); HUL5 (0.676); HO (0.669); RPL40A (0.653); RPL40B (0.653); UBC12 (0.641); CDC4 (0.627)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:85955-87961:+ | gene-YML088W_AKU4011 | rna-NM_001182447.1_AKU4011 | cds-NP_013622.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:388217-390223:- | gene-YML088W_BG1 | rna-NM_001182447.1_BG1 | cds-NP_013622.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:92126-94132:+ | gene-YML088W_Bruggeman | rna-NM_001182447.1_Bruggeman | cds-NP_013622.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:93770-95776:+ | gene-YML088W_CAT1 | rna-NM_001182447.1_CAT1 | cds-NP_013622.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:85957-87963:+ | gene-YML088W_CBS1585 | rna-NM_001182447.1_CBS1585 | cds-NP_013622.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:91894-93900:+ | gene-YML088W_CBS436 | rna-NM_001182447.1_CBS436 | cds-NP_013622.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:86673-88679:+ | gene-YML088W_CBS6412 | rna-NM_001182447.1_CBS6412 | cds-NP_013622.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:85144-87150:+ | gene-YML088W_CBS6413 | rna-NM_001182447.1_CBS6413 | cds-NP_013622.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:86956-88962:+ | gene-YML088W_CENPK1137D | rna-NM_001182447.1_CENPK1137D | cds-NP_013622.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:86233-88239:+ | gene-YML088W_EthanolRed | rna-NM_001182447.1_EthanolRed | cds-NP_013622.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:86742-88748:+ | gene-YML088W_FaliES1 | rna-NM_001182447.1_FaliES1 | cds-NP_013622.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:1511-3517:- | gene-YML088W_JAY291 | rna-NM_001182447.1_JAY291 | cds-NP_013622.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:90646-92652:+ | gene-YML088W_MUCL30387 | rna-NM_001182447.1_MUCL30387 | cds-NP_013622.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:93796-95802:+ | gene-YML088W_MUCL30388 | rna-NM_001182447.1_MUCL30388 | cds-NP_013622.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:85971-87977:+ | gene-YML088W_MUCL39482 | rna-NM_001182447.1_MUCL39482 | cds-NP_013622.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:90704-92710:+ | gene-YML088W_MUCL42920 | rna-NM_001182447.1_MUCL42920 | cds-NP_013622.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:92189-94195:+ | gene-YML088W_NCIM3186 | rna-NM_001182447.1_NCIM3186 | cds-NP_013622.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:86770-88776:+ | gene-YML088W_NCYC1407 | rna-NM_001182447.1_NCYC1407 | cds-NP_013622.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:92125-94131:+ | gene-YML088W_PE2H3 | rna-NM_001182447.1_PE2H3 | cds-NP_013622.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:92063-94069:+ | gene-YML088W_PE2H4 | rna-NM_001182447.1_PE2H4 | cds-NP_013622.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:92235-94241:+ | gene-YML088W_S288C | rna-NM_001182447.1_S288C | cds-NP_013622.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:90028-92034:- | gene-YML088W_SA1 | rna-NM_001182447.1_SA1 | cds-NP_013622.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:86034-88040:+ | gene-YML088W_ThermosaccDry | rna-NM_001182447.1_ThermosaccDry | cds-NP_013622.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:90418-92424:+ | gene-YML088W_VR1 | rna-NM_001182447.1_VR1 | cds-NP_013622.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:65562-67568:+ | gene-YML088W_ZTW1 | rna-NM_001182447.1_ZTW1 | cds-NP_013622.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:96762-98765:+ | gene-YML088W_Sparadoxus | rna-NM_001182447.1_Sparadoxus | cds-NP_013622.1_Sparadoxus | 89.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |