Gene name: UBX7
Reference locus (S288C): YBR273C
Gene biotype: protein_coding
Description: UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p; UBX7 has a paralog, UBX6, that arose from the whole genome duplication
Top 10 interactors (score): CDC48 (0.994); SHP1 (0.986); UBX2 (0.97); UBX4 (0.931); UBX5 (0.909); DOA1 (0.868); UBX3 (0.844); NPL4 (0.799); AFG2 (0.797); DFM1 (0.783); UFD1 (0.743); UFD2 (0.68); RPO21 (0.617); MRPL20 (0.613); GID7 (0.592); TDA1 (0.561); RPT2 (0.546); NAM9 (0.53); FCF2 (0.524); SSH4 (0.507)
Homologues (species, bitscore): UBXN1 (Homo sapiens, 53.1); Ubxn1 (Mus musculus, 58.2); ubxn4 (Xenopus tropicalis, 57.8); CG8209 (Drosophila melanogaster, 56.6); ubxn-1 (Caenorhabditis elegans, 63.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:732340-733650:- | gene-YBR273C_AKU4011 | rna-NM_001178621.1_AKU4011 | cds-NP_009832.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:103359-104669:- | gene-YBR273C_BG1 | rna-NM_001178621.1_BG1 | cds-NP_009832.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:733498-734808:- | gene-YBR273C_Bruggeman | rna-NM_001178621.1_Bruggeman | cds-NP_009832.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:737225-738535:- | gene-YBR273C_CAT1 | rna-NM_001178621.1_CAT1 | cds-NP_009832.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:723906-725216:- | gene-YBR273C_CBS1585 | rna-NM_001178621.1_CBS1585 | cds-NP_009832.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:730346-731656:- | gene-YBR273C_CBS436 | rna-NM_001178621.1_CBS436 | cds-NP_009832.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:818521-819831:- | gene-YBR273C_CBS6412 | rna-NM_001178621.1_CBS6412 | cds-NP_009832.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:729954-731264:- | gene-YBR273C_CBS6413 | rna-NM_001178621.1_CBS6413 | cds-NP_009832.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:741961-743271:- | gene-YBR273C_CENPK1137D | rna-NM_001178621.1_CENPK1137D | cds-NP_009832.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:855375-856685:- | gene-YBR273C_EthanolRed | rna-NM_001178621.1_EthanolRed | cds-NP_009832.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:748722-750032:- | gene-YBR273C_FaliES1 | rna-NM_001178621.1_FaliES1 | cds-NP_009832.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:54030-55340:+ | gene-YBR273C_JAY291 | rna-NM_001178621.1_JAY291 | cds-NP_009832.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:735541-736851:- | gene-YBR273C_MUCL30387 | rna-NM_001178621.1_MUCL30387 | cds-NP_009832.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:752623-753933:- | gene-YBR273C_MUCL30388 | rna-NM_001178621.1_MUCL30388 | cds-NP_009832.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:722213-723523:- | gene-YBR273C_MUCL39482 | rna-NM_001178621.1_MUCL39482 | cds-NP_009832.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:732079-733389:- | gene-YBR273C_MUCL42920 | rna-NM_001178621.1_MUCL42920 | cds-NP_009832.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:747858-749168:- | gene-YBR273C_NCIM3186 | rna-NM_001178621.1_NCIM3186 | cds-NP_009832.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:724102-725412:- | gene-YBR273C_NCYC1407 | rna-NM_001178621.1_NCYC1407 | cds-NP_009832.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:747227-748537:- | gene-YBR273C_PE2H3 | rna-NM_001178621.1_PE2H3 | cds-NP_009832.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:744903-746213:- | gene-YBR273C_PE2H4 | rna-NM_001178621.1_PE2H4 | cds-NP_009832.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:748061-749371:- | gene-YBR273C_S288C | rna-NM_001178621.1_S288C | cds-NP_009832.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:103181-104491:- | gene-YBR273C_SA1 | rna-NM_001178621.1_SA1 | cds-NP_009832.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:747714-749024:- | gene-YBR273C_ThermosaccDry | rna-NM_001178621.1_ThermosaccDry | cds-NP_009832.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:727925-729235:- | gene-YBR273C_VR1 | rna-NM_001178621.1_VR1 | cds-NP_009832.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:720558-721868:- | gene-YBR273C_ZTW1 | rna-NM_001178621.1_ZTW1 | cds-NP_009832.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:764466-765776:- | gene-YBR273C_Sparadoxus | rna-NM_001178621.1_Sparadoxus | cds-NP_009832.1_Sparadoxus | 88.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |