Gene name: UBX6
Reference locus (S288C): YJL048C
Gene biotype: protein_coding
Description: UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline; UBX6 has a paralog, UBX7, that arose from the whole genome duplication
Top 10 interactors (score): UBX4 (0.929); CDC48 (0.928); UBX5 (0.814); AFG2 (0.797); DOA1 (0.778); SHP1 (0.76); UBX2 (0.755); NPL4 (0.721); UFD1 (0.663); YML045W (0.618); YCL020W (0.618); PRE4 (0.616); RPO21 (0.604); YAR009C (0.593); YPR137C-A (0.567); FUN19 (0.567); YAR010C (0.567); YMR046C (0.565); YJR026W (0.565); YJR028W (0.565)
Homologues (species, bitscore): UBXN4 (Homo sapiens, 50.4); Ubxn1 (Mus musculus, 53.9); ubxn1 (Xenopus tropicalis, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:330257-331447:- | gene-YJL048C_AKU4011 | rna-NM_001181481.1_AKU4011 | cds-NP_012487.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:282348-283538:+ | gene-YJL048C_BG1 | rna-NM_001181481.1_BG1 | cds-NP_012487.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:342835-344025:- | gene-YJL048C_Bruggeman | rna-NM_001181481.1_Bruggeman | cds-NP_012487.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:348072-349262:- | gene-YJL048C_CAT1 | rna-NM_001181481.1_CAT1 | cds-NP_012487.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:341911-343101:- | gene-YJL048C_CBS1585 | rna-NM_001181481.1_CBS1585 | cds-NP_012487.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:359961-361151:- | gene-YJL048C_CBS436 | rna-NM_001181481.1_CBS436 | cds-NP_012487.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:331016-332206:- | gene-YJL048C_CBS6412 | rna-NM_001181481.1_CBS6412 | cds-NP_012487.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:332363-333553:- | gene-YJL048C_CBS6413 | rna-NM_001181481.1_CBS6413 | cds-NP_012487.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:329911-331101:- | gene-YJL048C_CENPK1137D | rna-NM_001181481.1_CENPK1137D | cds-NP_012487.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:334095-335285:- | gene-YJL048C_EthanolRed | rna-NM_001181481.1_EthanolRed | cds-NP_012487.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:345669-346859:- | gene-YJL048C_FaliES1 | rna-NM_001181481.1_FaliES1 | cds-NP_012487.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000210.1:6038-7228:+ | gene-YJL048C_JAY291 | rna-NM_001181481.1_JAY291 | cds-NP_012487.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:343990-345180:- | gene-YJL048C_MUCL30387 | rna-NM_001181481.1_MUCL30387 | cds-NP_012487.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:340030-341220:- | gene-YJL048C_MUCL30388 | rna-NM_001181481.1_MUCL30388 | cds-NP_012487.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:334665-335855:- | gene-YJL048C_MUCL39482 | rna-NM_001181481.1_MUCL39482 | cds-NP_012487.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:341359-342549:- | gene-YJL048C_MUCL42920 | rna-NM_001181481.1_MUCL42920 | cds-NP_012487.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:347426-348616:- | gene-YJL048C_NCIM3186 | rna-NM_001181481.1_NCIM3186 | cds-NP_012487.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:333361-334551:- | gene-YJL048C_NCYC1407 | rna-NM_001181481.1_NCYC1407 | cds-NP_012487.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:345758-346948:- | gene-YJL048C_PE2H3 | rna-NM_001181481.1_PE2H3 | cds-NP_012487.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:345403-346593:- | gene-YJL048C_PE2H4 | rna-NM_001181481.1_PE2H4 | cds-NP_012487.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:347447-348637:- | gene-YJL048C_S288C | rna-NM_001181481.1_S288C | cds-NP_012487.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:143319-144509:- | gene-YJL048C_SA1 | rna-NM_001181481.1_SA1 | cds-NP_012487.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:339082-340272:- | gene-YJL048C_ThermosaccDry | rna-NM_001181481.1_ThermosaccDry | cds-NP_012487.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:341572-342762:- | gene-YJL048C_VR1 | rna-NM_001181481.1_VR1 | cds-NP_012487.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:320459-321649:- | gene-YJL048C_ZTW1 | rna-NM_001181481.1_ZTW1 | cds-NP_012487.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:344502-345695:- | gene-YJL048C_Sparadoxus | rna-NM_001181481.1_Sparadoxus | cds-NP_012487.1_Sparadoxus | 87.6 | 99.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |