Gene name: UBX5
Reference locus (S288C): YDR330W
Gene biotype: protein_coding
Description: Ubx domain-containing protein 5; UBX domain-containing protein that interacts with Cdc48p; ubiquitin regulatory X is also known as UBX
Top 10 interactors (score): CDC48 (0.999); UBX4 (0.983); AFG2 (0.98); NPL4 (0.971); UFD1 (0.966); SHP1 (0.958); CUL3 (0.944); UBX3 (0.941); UBX7 (0.909); UFD2 (0.882); ELC1 (0.853); DOA1 (0.817); UBX6 (0.814); HRT1 (0.804); RPO21 (0.757); OTU1 (0.729); UBI4 (0.726); CDC53 (0.725); ELA1 (0.696); CBC2 (0.691)
Homologues (species, bitscore): UBXN7 (Homo sapiens, 132.5); Ubxn7 (Mus musculus, 133.7); ubxn7 (Danio rerio, 147.9); ubxn7 (Xenopus tropicalis, 130.2); CG8892 (Drosophila melanogaster, 116.3); AT1G14570 (Arabidopsis thaliana, 107.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1073911-1075413:+ | gene-YDR330W_AKU4011 | rna-NM_001180638.1_AKU4011 | cds-NP_010617.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:56146-57648:- | gene-YDR330W_BG1 | rna-NM_001180638.1_BG1 | cds-NP_010617.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1101456-1102958:+ | gene-YDR330W_Bruggeman | rna-NM_001180638.1_Bruggeman | cds-NP_010617.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1088199-1089701:+ | gene-YDR330W_CAT1 | rna-NM_001180638.1_CAT1 | cds-NP_010617.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1068355-1069857:+ | gene-YDR330W_CBS1585 | rna-NM_001180638.1_CBS1585 | cds-NP_010617.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1086739-1088241:+ | gene-YDR330W_CBS436 | rna-NM_001180638.1_CBS436 | cds-NP_010617.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1065043-1066545:+ | gene-YDR330W_CBS6412 | rna-NM_001180638.1_CBS6412 | cds-NP_010617.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1086274-1087776:+ | gene-YDR330W_CBS6413 | rna-NM_001180638.1_CBS6413 | cds-NP_010617.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1126510-1128012:+ | gene-YDR330W_CENPK1137D | rna-NM_001180638.1_CENPK1137D | cds-NP_010617.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:249451-250953:+ | gene-YDR330W_EthanolRed | rna-NM_001180638.1_EthanolRed | cds-NP_010617.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1080666-1082168:+ | gene-YDR330W_FaliES1 | rna-NM_001180638.1_FaliES1 | cds-NP_010617.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:33178-34680:+ | gene-YDR330W_JAY291 | rna-NM_001180638.1_JAY291 | cds-NP_010617.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1086700-1088202:+ | gene-YDR330W_MUCL30387 | rna-NM_001180638.1_MUCL30387 | cds-NP_010617.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1075652-1077154:+ | gene-YDR330W_MUCL30388 | rna-NM_001180638.1_MUCL30388 | cds-NP_010617.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1060162-1061664:+ | gene-YDR330W_MUCL39482 | rna-NM_001180638.1_MUCL39482 | cds-NP_010617.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1007233-1008735:+ | gene-YDR330W_MUCL42920 | rna-NM_001180638.1_MUCL42920 | cds-NP_010617.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1127795-1129297:+ | gene-YDR330W_NCIM3186 | rna-NM_001180638.1_NCIM3186 | cds-NP_010617.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1073453-1074955:+ | gene-YDR330W_NCYC1407 | rna-NM_001180638.1_NCYC1407 | cds-NP_010617.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1084456-1085958:+ | gene-YDR330W_PE2H3 | rna-NM_001180638.1_PE2H3 | cds-NP_010617.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1090041-1091543:+ | gene-YDR330W_PE2H4 | rna-NM_001180638.1_PE2H4 | cds-NP_010617.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1127872-1129374:+ | gene-YDR330W_S288C | rna-NM_001180638.1_S288C | cds-NP_010617.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:98683-100185:+ | gene-YDR330W_SA1 | rna-NM_001180638.1_SA1 | cds-NP_010617.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1084939-1086441:+ | gene-YDR330W_ThermosaccDry | rna-NM_001180638.1_ThermosaccDry | cds-NP_010617.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1100856-1102358:+ | gene-YDR330W_VR1 | rna-NM_001180638.1_VR1 | cds-NP_010617.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:129051-130553:+ | gene-YDR330W_ZTW1 | rna-NM_001180638.1_ZTW1 | cds-NP_010617.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1080338-1081839:+ | gene-YDR330W_Sparadoxus | rna-NM_001180638.1_Sparadoxus | cds-NP_010617.1_Sparadoxus | 90.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |